MirGeneDB 2.1
MirGeneDB ID

Tni-Mir-223

Family name MIR-223 (all species)
Seed GUCAGUU
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID tni-mir-223
Paralogues
Orthologues Aca-Mir-223  Ami-Mir-223  Bta-Mir-223  Cfa-Mir-223  Cli-Mir-223  Cmi-Mir-223  Cpi-Mir-223  Cpo-Mir-223  Dno-Mir-223  Dre-Mir-223  Ebu-Mir-223  Ete-Mir-223  Gga-Mir-223  Gja-Mir-223  Gmo-Mir-223  Hsa-Mir-223  Lch-Mir-223  Loc-Mir-223  Mal-Mir-223  Mdo-Mir-223  Mml-Mir-223  Mmu-Mir-223  Mun-Mir-223  Oan-Mir-223  Ocu-Mir-223  Pbv-Mir-223  Pma-Mir-223  Rno-Mir-223  Sha-Mir-223  Spt-Mir-223  Sto-Mir-223  Tgu-Mir-223  Xla-Mir-223  Xtr-Mir-223 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)		 Un_random: 92603290-92603354 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGCCCCGUUUGCCGAUCAGGCCCUUCACUUAGUGUAUUUGACAAGCUGUGUUUGACACUCUGUAUCUGCGAGUGUCAGUUUGUCAAAUACCCCAAGUGAGGUGUCACUUGUCUGCAGCCGAACUC
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Structure
        10          20        30        40         50        60 
AGCCCCGUUUGCCGAUCA--   C        AGU               -|GU  GACACUC 
                    GGC CUUCACUU   GUAUUUGACAAGCUG U  UU       U
                    CUG GGAGUGAA   CAUAAACUGUUUGAC G  AG       G
CUCAAGCCGACGUCUGUUCA   U        CCC               U^UG  CGUCUAU 
   120       110       100        90        80        70
Deep sequencing
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CommentThere is a second Dicer cut +4/+5 on the 5p arm.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Sp Sp Sp To
Star sequence

Tni-Mir-223_5p*
mirBase accessionNone
Sequence 
0- AGUGUAUUUGACAAGCUGUGUUU -23
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Mature sequence

Tni-Mir-223_3p
mirBase accessionMIMAT0002895
Sequence 
42- UGUCAGUUUGUCAAAUACCCCAA -65
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