MirGeneDB 3.0
MirGeneDB ID

Xtr-Mir-223

Family name MIR-223 (all species)
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-223
Paralogues
Orthologues Aca-Mir-223  Ami-Mir-223  Bta-Mir-223  Cfa-Mir-223  Cja-Mir-223  Cli-Mir-223  Cmi-Mir-223  Cpi-Mir-223  Cpo-Mir-223  Dno-Mir-223  Dre-Mir-223  Ebu-Mir-223  Eca-Mir-223  Ete-Mir-223  Gga-Mir-223  Gja-Mir-223  Gmo-Mir-223  Hsa-Mir-223-v1  Laf-Mir-223  Lch-Mir-223  Loc-Mir-223  Mal-Mir-223  Mdo-Mir-223  Mml-Mir-223  Mmr-Mir-223  Mmu-Mir-223  Mun-Mir-223  Neu-Mir-223  Oan-Mir-223  Ocu-Mir-223  Pab-Mir-223  Pbv-Mir-223  Pma-Mir-223  Rno-Mir-223  Sha-Mir-223  Spt-Mir-223  Sto-Mir-223  Tgu-Mir-223  Tni-Mir-223  Xla-Mir-223 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(xenTro9_add)		 chr8: 19321719-19321783 [-] UCSC Ensembl
Seed GUCAGUU
Precursor
(pre-Mir +30nt flank)		 
GAAGAUGAAAGUUCAGUAAGUGUGGCACUGAGUGUAUUUGACAAGCUGAGUCCGACACUCAAUGAGACAGAGUGUCAGUUUGUCAAAUACCCCAAGUGAGGCACCAUCUCUCUGCUGGAACAACU
Get precursor sequence
Structure
        10          20        30        40        50        60  
GAAGAUGAAAGUUCAGUAA--|   GG    GAGU                GUCCGACACUCA 
                     GUGU  CACU    GUAUUUGACAAGCUGA            \
                     CACG  GUGA    CAUAAACUGUUUGACU            A
UCAACAAGGUCGUCUCUCUAC^   GA    ACCC                GUGAGACAGAGU 
   120       110       100        90        80        70
Deep sequencing
Go to detailed chart
CommentThere is a second Dicer cut +6 on the 5p arm.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
An Br Em Em He Ve
Star sequence

Xtr-Mir-223_5p*
mirBase accessionNone
Sequence 
0- AGUGUAUUUGACAAGCUGAGUCC -23
Get sequence
Mature sequence

Xtr-Mir-223_3p
mirBase accessionMIMAT0003634
Sequence 
42- UGUCAGUUUGUCAAAUACCCCAA -65
Get sequence
Proposed targets TargetScanVert: xtr-miR-223