| MirGeneDB ID | Lch-Mir-223 |
|---|---|
| Family name | MIR-223 (all species) |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Aca-Mir-223 Ami-Mir-223 Bta-Mir-223 Cfa-Mir-223 Cja-Mir-223 Cli-Mir-223 Cmi-Mir-223 Cpi-Mir-223 Cpo-Mir-223 Dno-Mir-223 Dre-Mir-223 Ebu-Mir-223 Eca-Mir-223 Ete-Mir-223 Gga-Mir-223 Gja-Mir-223 Gmo-Mir-223 Hsa-Mir-223-v1 Laf-Mir-223 Loc-Mir-223 Mal-Mir-223 Mdo-Mir-223 Mml-Mir-223 Mmr-Mir-223 Mmu-Mir-223 Mun-Mir-223 Neu-Mir-223 Oan-Mir-223 Ocu-Mir-223 Pab-Mir-223 Pbv-Mir-223 Pma-Mir-223 Rno-Mir-223 Sha-Mir-223 Spt-Mir-223 Sto-Mir-223 Tgu-Mir-223 Tni-Mir-223 Xla-Mir-223 Xtr-Mir-223 |
| Node of Origin (locus) | Vertebrata |
| Node of Origin (family) | Vertebrata |
| Genome context (LatCha1_add) |
JH126995.1: 1384493-1384557 [+] Ensembl |
| Seed | GUCAGUU |
| Precursor (pre-Mir +30nt flank) |
CCUGCUGCUCCGAUCCCCAGCACAGCGCUCAGUGUAUUUGACAAGCUGAAUUCGACACUCAGUUCUGUAGAGUGUCAGUUUGUCAAAUACCCCAAGUGAGGUGUUGGUAAGCAACCAGACCUUCCGet precursor sequence |
| Structure | 10 20 30 40 50 60 CCUGCUGCUCCGAUCCC-- AG CAGU -| GACACUC CAGCAC CGCU GUAUUUGACAAGCUGA AUUC A GUUGUG GUGA CAUAAACUGUUUGACU UGAG G CCUUCCAGACCAACGAAUG GA ACCC G^ AUGUCUU 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Lch-Mir-223_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- AGUGUAUUUGACAAGCUGAAUUC -23
Get sequence
|
| Mature sequence | Lch-Mir-223_3p (predicted) |
| mirBase accession | None |
| Sequence |
42- UGUCAGUUUGUCAAAUACCCCAA -65
Get sequence
|
