MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-223

Family name MIR-223 (all species)
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues
Orthologues Aca-Mir-223  Ami-Mir-223  Bta-Mir-223  Cfa-Mir-223  Cli-Mir-223  Cmi-Mir-223  Cpi-Mir-223  Cpo-Mir-223  Dno-Mir-223  Dre-Mir-223  Ebu-Mir-223  Eca-Mir-223  Ete-Mir-223  Gga-Mir-223  Gja-Mir-223  Gmo-Mir-223  Hsa-Mir-223-v1  Laf-Mir-223  Lch-Mir-223  Loc-Mir-223  Mal-Mir-223  Mdo-Mir-223  Mml-Mir-223  Mmr-Mir-223  Mmu-Mir-223  Mun-Mir-223  Neu-Mir-223  Oan-Mir-223  Ocu-Mir-223  Pab-Mir-223  Pbv-Mir-223  Pma-Mir-223  Rno-Mir-223  Sha-Mir-223  Spt-Mir-223  Sto-Mir-223  Tgu-Mir-223  Tni-Mir-223  Xla-Mir-223  Xtr-Mir-223 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021937.1: 59874718-59874782 [+] UCSC Ensembl
Seed GUCAGUU
Precursor
(pre-Mir +30nt flank)		 
CCUGGCCUGGCCUCCUGCAGUGCCACGCUCCGUGUAUUUGACAAGCUGAGUUAGACACUCCGUGUGGUAGAGUGUCAGUUUGUCAAAUACCCCAAGUGUGACACAUGCUUAGCAGCUCCAGACCA
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Structure
        10          20        30        40        50        60  
CCUGGCCUGGCCUCCUGCA--|  C      CCGU                GUUAGACACUCC 
                     GUG CACGCU    GUAUUUGACAAGCUGA            \
                     CAC GUGUGA    CAUAAACUGUUUGACU            G
ACCAGACCUCGACGAUUCGUA^  A      ACCC                GUGAGAUGGUGU 
   120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Star sequence

Cja-Mir-223_5p*
mirBase accessionNone
Sequence 
0- CGUGUAUUUGACAAGCUGAGUUA -23
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Mature sequence

Cja-Mir-223_3p
mirBase accessionNone
Sequence 
42- UGUCAGUUUGUCAAAUACCCCAA -65
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