MirGeneDB 2.1
MirGeneDB ID

Ami-Mir-223

Family name MIR-223 (all species)
Seed GUCAGUU
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-223
Paralogues
Orthologues Aca-Mir-223  Bta-Mir-223  Cfa-Mir-223  Cli-Mir-223  Cmi-Mir-223  Cpi-Mir-223  Cpo-Mir-223  Dno-Mir-223  Dre-Mir-223  Ebu-Mir-223  Ete-Mir-223  Gga-Mir-223  Gja-Mir-223  Gmo-Mir-223  Hsa-Mir-223  Lch-Mir-223  Loc-Mir-223  Mal-Mir-223  Mdo-Mir-223  Mml-Mir-223  Mmu-Mir-223  Mun-Mir-223  Oan-Mir-223  Ocu-Mir-223  Pbv-Mir-223  Pma-Mir-223  Rno-Mir-223  Sha-Mir-223  Spt-Mir-223  Sto-Mir-223  Tgu-Mir-223  Tni-Mir-223  Xla-Mir-223  Xtr-Mir-223 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017709938.1: 10857700-10857764 [+] UCSC
Precursor
(pre-Mir +30nt flank)
GCCCUCCAAAGACCGCGCAGUGCUGCACUCCGUGUAUUUGACAAGCUGAGUUUGACACUCAGUGUGGCAGAGUGUCAGUUUGUCAAAUACCCCAAGUGAGGCAUUUGCUUAGCAGCACGGAGCCA
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Structure
        10          20        30        40        50        60  
GCCCUCCAAAGACCGCGC--|     G    CCGU                GUUUGACACUCA 
                    AGUGCU CACU    GUAUUUGACAAGCUGA            \
                    UUACGG GUGA    CAUAAACUGUUUGACU            G
ACCGAGGCACGACGAUUCGU^     A    ACCC                GUGAGACGGUGU 
   120       110       100        90        80        70
Deep sequencing
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CommentThere is a second Dicer cut +3 on the 5p arm.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Ami-Mir-223_5p*
mirBase accessionMIMAT0038258
Sequence 
0- CGUGUAUUUGACAAGCUGAGUUU -23
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Mature sequence

Ami-Mir-223_3p
mirBase accessionMIMAT0038259
Sequence 
42- UGUCAGUUUGUCAAAUACCCCAA -65
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