MirGeneDB 3.0
MirGeneDB ID

Rno-Mir-223

Family name MIR-223 (all species)
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-223
Paralogues
Orthologues Aca-Mir-223  Ami-Mir-223  Bta-Mir-223  Cfa-Mir-223  Cja-Mir-223  Cli-Mir-223  Cmi-Mir-223  Cpi-Mir-223  Cpo-Mir-223  Dno-Mir-223  Dre-Mir-223  Ebu-Mir-223  Eca-Mir-223  Ete-Mir-223  Gga-Mir-223  Gja-Mir-223  Gmo-Mir-223  Hsa-Mir-223-v1  Laf-Mir-223  Lch-Mir-223  Loc-Mir-223  Mal-Mir-223  Mdo-Mir-223  Mml-Mir-223  Mmr-Mir-223  Mmu-Mir-223  Mun-Mir-223  Neu-Mir-223  Oan-Mir-223  Ocu-Mir-223  Pab-Mir-223  Pbv-Mir-223  Pma-Mir-223  Sha-Mir-223  Spt-Mir-223  Sto-Mir-223  Tgu-Mir-223  Tni-Mir-223  Xla-Mir-223  Xtr-Mir-223 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(rn6)		 chrX: 65367837-65367901 [+] UCSC Ensembl
Seed GUCAGUU
Precursor
(pre-Mir +30nt flank)		 
CCUGAUCUGGCCUUCUGCAGUGUUACGCUCCGUGUAUUUGACAAGCUGAGUUGGACACUCUGUGUGGUAGAGUGUCAGUUUGUCAAAUACCCCAAGUGUGGCUCAUGCUUAUCAGCUCCAGGUCC
Get precursor sequence
Structure
        10         20         30        40        50        60  
CCUGAUCUGGCCUUCUG-  GU-|       CCGU                GUUGGACACUCU 
                  CA   GUUACGCU    GUAUUUGACAAGCUGA            \
                  GU   CGGUGUGA    CAUAAACUGUUUGACU            G
CCUGGACCUCGACUAUUC  ACU^       ACCC                GUGAGAUGGUGU 
   120       110       100        90        80        70
Deep sequencing
Go to detailed chart
CommentThe Dicer cuts on the 5p arm are highly variable.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Dr Dr Ad Bi Bi Bi Bi Br Br Br Br Ce Ce Ce Ce Co Co Co Co Du Du Du Du Fa He He He Hi Hi Il Il Je Je Ki Ki Ki Ki Ki La Li Li Li Li Li Li Lu Me Me Mu Ov Pa Pa Pa Sk Sm So So So So Sp St St St St Te Te Th Ut Wh
Star sequence

Rno-Mir-223_5p*
mirBase accessionMIMAT0017165
Sequence 
0- CGUGUAUUUGACAAGCUGAGUUG -23
Get sequence
Proposed targets TargetScanVert: rno-miR-223-5p
miRDB: MIMAT0017165
Mature sequence

Rno-Mir-223_3p
mirBase accessionMIMAT0000892
Sequence 
42- UGUCAGUUUGUCAAAUACCCCAA -65
Get sequence
Proposed targets microrna.org: MIMAT0000892
TargetScanVert: rno-miR-223-3p
miRDB: MIMAT0000892