MirGeneDB ID | Tni-Mir-2184-P1 |
Family name |
MIR-2184 (all species) |
Seed |
ACAGUAA |
Species |
Pufferfish (Tetraodon nigroviridis) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Ami-Mir-2184
Cpi-Mir-2184
Dre-Mir-2184-P1a
Dre-Mir-2184-P1b
Gga-Mir-2184
Gmo-Mir-2184
Lch-Mir-2184
Loc-Mir-2184
Mal-Mir-2184-P1
Mun-Mir-2184
Xtr-Mir-2184
|
Node of Origin (locus) |
Clupeocephala
|
Node of Origin (family) |
Gnathostomata
|
Genome context (Tetraodon_nigroviridis.TETRAODON8.dna.toplevel) |
7: 7923438-7923495 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UCUGUGCUUUGACCUCACUUUUCAGCUCUGAACAGUAAGAGUUUAUGUGCUGUUAUUUCUACUCCAGCACAUAAGCUUUUACGGUGCAGGGAGGCAGAAGAUGAACCGUUCUUCAGCC
Get precursor sequence
|
Structure | 10 20 30 40 50
UCUGUGCUUUGACCUCA- CAG-| A A UUAUU
CUUUU CUCUG AC GUAAGAGUUUAUGUGCUG U
GAAGA GGGAC UG CAUUUUCGAAUACACGAC C
CCGACUUCUUGCCAAGUA CGGA^ G G CUCAU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Tni-Mir-2184-P1_5p |
mirBase accession | None |
Sequence |
0- AACAGUAAGAGUUUAUGUGCUGU -23
Get sequence
|
Star sequence |
Tni-Mir-2184-P1_3p* |
mirBase accession | None |
Sequence |
35- AGCACAUAAGCUUUUACGGUGCA -58
Get sequence
|