| MirGeneDB ID | Gmo-Mir-2184 |
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| Family name |
MIR-2184 (all species) |
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| Species |
Cod (Gadus morhua) |
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| MiRBase ID |
gmo-mir-2184
|
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| Paralogues |
|
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| Orthologues |
Ami-Mir-2184
Cmi-Mir-2184-v1
Cpi-Mir-2184
Dre-Mir-2184-P1a
Dre-Mir-2184-P1b
Gga-Mir-2184
Lch-Mir-2184
Loc-Mir-2184
Mal-Mir-2184-P1
Mal-Mir-2184-P2
Mun-Mir-2184
Tni-Mir-2184-P1
Xla-Mir-2184-P3
Xla-Mir-2184-P4
Xtr-Mir-2184
|
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| Node of Origin (locus) |
Gnathostomata
|
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| Node of Origin (family) |
Gnathostomata
|
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Genome context
(Gadus_morhua.gadMor1.dna.toplevel) |
contig205961: 92-148 [+]
UCSC
Ensembl
|
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| Seed |
ACAGUAA |
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Precursor
(pre-Mir +30nt flank) |
CCAGCCGCCCACUGGUCUCUCUCAGCCCUGAACAGUAAGAGUUUAUGUGCUGUGAGCUGCCAUCAGUACAUGACCUCUUGCAGUGCAGGGAGAGUGAGAAUGUACGACUGCUGGAAA
Get precursor sequence
|
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| Structure | 10 20 30 40 50
CCAGCCGCCCACUGGUC- UCAG-| A A U UGAGC
UCUC CCCUG AC GUAAGAG UUAUGUGCUG \
AGAG GGGAC UG CGUUCUC AGUACAUGAC U
AAAGGUCGUCAGCAUGUA UGAGA^ G A C UACCG
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | Not in assembly (Genbank) but in trace archives. |
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| 3' NTU |
Unknown
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Gmo-Mir-2184_5p |
| mirBase accession | MIMAT0046036 |
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| Sequence |
0- AACAGUAAGAGUUUAUGUGCUGU -23
Get sequence
|
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| Star sequence |
Gmo-Mir-2184_3p* |
| mirBase accession | MIMAT0046037 |
|---|
| Sequence |
34- AGUACAUGACCUCUUGCAGUGCA -57
Get sequence
|
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