| MirGeneDB ID | Dre-Mir-2184-P1b |
|---|
| Family name |
MIR-2184 (all species) |
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| Seed |
ACAGUAA |
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| Species |
Zebrafish (Danio rerio) |
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| MiRBase ID |
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| Paralogues |
Dre-Mir-2184-P1a
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| Orthologues |
Ami-Mir-2184
Cpi-Mir-2184
Gga-Mir-2184
Gmo-Mir-2184
Lch-Mir-2184
Loc-Mir-2184
Mal-Mir-2184-P1
Mun-Mir-2184
Tni-Mir-2184-P1
Xtr-Mir-2184
|
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| Node of Origin (locus) |
D. rerio
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| Node of Origin (family) |
Gnathostomata
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Genome context
(danRer11) |
LKPD01047922.1: 7188-7244 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GUUCAUCUCUGAAUGAUGCCCUAAGCCCUAAACAGUAAGAGUUUAUGUGCUGAGGUUGAAAAUUCAGCACAUGGUCUCUUACUUGUAGGGAAAAAGGUUUCUAUCGGCCUGUCACAU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GUUCAUCUCUGAAUGAU--| CUAAG AAC U GGUU
GCC CCCUA AGUAAGAG UUAUGUGCUGA G
UGG GGGAU UCAUUCUC GGUACACGACU A
UACACUGUCCGGCUAUCUU^ AAAAA GU- U UAAA
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | Not in assembly but in trace archives. |
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
|
| Br |
Br |
Em |
Ey |
Gu |
Gu |
He |
Li |
Li |
Ov |
Te |
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| Mature sequence |
Dre-Mir-2184-P1b_5p |
| mirBase accession | None |
|---|
| Sequence |
0- AACAGUAAGAGUUUAUGUGCUGA -23
Get sequence
|
|---|
| Star sequence |
Dre-Mir-2184-P1b_3p* |
| mirBase accession | None |
|---|
| Sequence |
35- AGCACAUGGUCUCUUACUUGUA -57
Get sequence
|
|---|
