MirGeneDB 2.1

MirGeneDB ID

Spt-Mir-32

Family name MIR-32 (all species)
Seed AUUGCAC
Species Tuatara (Sphenodon punctatus)
MiRBase ID
Paralogues
Orthologues Aca-Mir-32  Ami-Mir-32  Bta-Mir-32  Cfa-Mir-32  Cli-Mir-32  Cmi-Mir-32  Cpi-Mir-32  Cpo-Mir-32  Dno-Mir-32  Ete-Mir-32  Gga-Mir-32  Gja-Mir-32  Hsa-Mir-32  Lch-Mir-32  Mdo-Mir-32  Mml-Mir-32  Mmu-Mir-32  Mun-Mir-32  Oan-Mir-32  Ocu-Mir-32  Pbv-Mir-32  Rno-Mir-32  Sha-Mir-32  Sto-Mir-32  Tgu-Mir-32  Xla-Mir-32 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(GCA_003113815.1_ASM311381v1_TUATARA)
QEPC01013498.1: 5041516-5041577 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAGCUCCCAUUCUGCUUGCUCUGGUGGAGAUAUUGCACAUUACUAAGUUGCAUGUUGUCACGGCCUCAGUGCAAUUUAGUGUGUGCGAUAUUUUCACACGAGUGCAUGCACACGGGUAUGGC
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Structure
        10          20        30        40        50        60 
AAGCUCCCAUUCUGCUU--|   UG                 U           UGUUGUCA 
                   GCUC  GUGGAGAUAUUGCACAU ACUAAGUUGCA        \
                   UGAG  CACUUUUAUAGCGUGUG UGAUUUAACGU        C
CGGUAUGGGCACACGUACG^   CA                 -           GACUCCGG 
120       110       100        90         80        70
Deep sequencing
3' NTU Unknown
MotifsUG at 5p(-14), UGUG in loop
Mature sequence

Spt-Mir-32_5p (predicted)

mirBase accessionNone
Sequence
0- UAUUGCACAUUACUAAGUUGCA -22
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Star sequence

Spt-Mir-32_3p* (predicted)

mirBase accessionNone
Sequence
41- CAAUUUAGUGUGUGCGAUAUU -62
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