MirGeneDB 2.1

MirGeneDB ID

Sme-Mir-71-P17

Family name MIR-71 (all species)
Seed GAAAGAC
Species Freshwater planarian (Schmidtea mediterranea)
MiRBase ID sme-mir-71b
Paralogues Sme-Mir-71-P16a  Sme-Mir-71-P16b  Sme-Mir-71-P18  Sme-Mir-71-P19 
Orthologues Aae-Mir-71  Asu-Mir-71  Bfl-Mir-71  Bge-Mir-71  Bla-Mir-71  Cbr-Mir-71  Cel-Mir-71  Cgi-Mir-71  Cte-Mir-71  Dma-Mir-71  Dpu-Mir-71  Esc-Mir-71  Hme-Mir-71  Isc-Mir-71  Lgi-Mir-71  Npo-Mir-71  Obi-Mir-71  Ovu-Mir-71  Pfl-Mir-71  Pmi-Mir-71  Sko-Mir-71  Spu-Mir-71  Tca-Mir-71 
Node of Origin (locus) S. mediterranea
Node of Origin (family) Bilateria
Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)
NNSW01000131_dd_Smes_g4_131: 1191188-1191254 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-71-P17)
Mir-71-P17 NNSW01000131_dd_Smes_g4_131: 1191188-1191254 [+] UCSC Ensembl
Mir-2-o52 NNSW01000131_dd_Smes_g4_131: 1191304-1191374 [+] UCSC Ensembl
Mir-2-o53 NNSW01000131_dd_Smes_g4_131: 1191422-1191481 [+] UCSC Ensembl
Mir-2-o54 NNSW01000131_dd_Smes_g4_131: 1191539-1191598 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUUUUGUUGUGUAGGUGAUUCAGUACUCUUUGAAAGACACAGGUAGUGGGACAGAUAUUAUCUAAUAAAAGCUUGUCCUUCUAAUGUGUUUUUCGAAAACCAUUGAAUCAAUCAUCAGUUCACUAGU
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Structure
        10          20        30        40        50        60   
AUUUUGUUGUGUAGGUG--|      ACUC             GG   U     AGAUAUUAUC 
                   AUUCAGU    UUUGAAAGACACA  UAG GGGAC          U
                   UAAGUUA    AAGCUUUUUGUGU  AUC UCCUG          A
UGAUCACUUGACUACUAAC^      CCAA             A-   U     UUCGAAAAUA 
     120       110       100        90         80        70
Deep sequencing
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CommentThere appears to be a U to C edit in position 1 of the 5p arm.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Se Se Se Se Se Se Se Se Se Se Se Se Ne Wh Wh Wh
Mature sequence

Sme-Mir-71-P17_5p

mirBase accessionMIMAT0003985
Sequence
0- UGAAAGACACAGGUAGUGGGAC -22
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Co-mature sequence

Sme-Mir-71-P17_3p

mirBase accessionMIMAT0003986
Sequence
45- UCCUUCUAAUGUGUUUUUCGAA -67
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