MirGeneDB 2.1
MirGeneDB ID

Sme-Mir-71-P16b

Family name MIR-71 (all species)
Seed GAAAGAC
Species Freshwater planarian (Schmidtea mediterranea)
MiRBase ID sme-mir-71a-2
Paralogues Sme-Mir-71-P16a  Sme-Mir-71-P17  Sme-Mir-71-P18  Sme-Mir-71-P19 
Orthologues Aae-Mir-71  Asu-Mir-71  Bfl-Mir-71  Bge-Mir-71  Bla-Mir-71  Cbr-Mir-71  Cel-Mir-71  Cgi-Mir-71  Cte-Mir-71  Dma-Mir-71  Dpu-Mir-71  Esc-Mir-71  Hme-Mir-71  Isc-Mir-71  Lgi-Mir-71  Npo-Mir-71  Obi-Mir-71  Ovu-Mir-71  Pfl-Mir-71  Pmi-Mir-71  Sko-Mir-71  Spu-Mir-71  Tca-Mir-71 
Node of Origin (locus) S. mediterranea
Node of Origin (family) Bilateria
Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)		 NNSW01000001_dd_Smes_g4_1: 13481649-13481705 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-71-P16b)		 Mir-71-P16b NNSW01000001_dd_Smes_g4_1: 13481649-13481705 [+] UCSC Ensembl
Mir-2-o51b NNSW01000001_dd_Smes_g4_1: 13481745-13481799 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAAAGAAUUUUAUUUUUUCUUGGAUAUAACUGAAAGACACGGGUAGUGAGAUAUGGAUUUUUCAUCUCUAUAUUCGUGUCUUUCAUAUUUAUUCACGAUGGUCAUCAUAAUUGUUCA
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Structure
        10          20        30        40        50        
CAAAGAAUUUUAUUUUU--| U      UAAC               GU     AUGGA 
                   UC UGGAUA    UGAAAGACACGGGUA  GAGAU     \
                   AG ACUUAU    ACUUUCUGUGCUUAU  CUCUA     U
ACUUGUUAAUACUACUGGU^ C      UUAU               AU     CUUUU 
     110       100        90        80        70        60
Deep sequencing
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CommentThere appears to be a U to C edit in position 1 of the 5p arm.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Se Se Se Se Se Se Se Se Se Se Se Se Ne Wh Wh Wh
Mature sequence

Sme-Mir-71-P16b_5p
mirBase accessionMIMAT0003984
Sequence 
0- UGAAAGACACGGGUAGUGAGAU -22
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Co-mature sequence

Sme-Mir-71-P16b_3p
mirBase accessionMIMAT0013772
Sequence 
35- CUCUAUAUUCGUGUCUUUCAUA -57
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