MirGeneDB 3.0

MirGeneDB ID

Pab-Mir-541

Family name

MIR-541 (all species)

Species

Sumatran orangutan (Pongo abelii)

MiRBase ID

Paralogues

Orthologues

Bta-Mir-541 Cja-Mir-541 Cpo-Mir-541 Dno-Mir-541 Eca-Mir-541 Ete-Mir-541 Hsa-Mir-541 Laf-Mir-541 Mml-Mir-541 Mmr-Mir-541 Mmu-Mir-541 Ocu-Mir-541 Rno-Mir-541

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)

CM054694.2: 105496524-105496589 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-541)

Mir-154-P1 CM054694.2: 105453044-105453102 [+] UCSC Ensembl
Mir-154-P2-v2 CM054694.2: 105454312-105454369 [+] UCSC Ensembl
Mir-154-P2-v1 CM054694.2: 105454313-105454368 [+] UCSC Ensembl
Mir-154-P3-v1 CM054694.2: 105454769-105454823 [+] UCSC Ensembl
Mir-154-P3-v2 CM054694.2: 105454770-105454822 [+] UCSC Ensembl
Mir-154-P4 CM054694.2: 105455995-105456051 [+] UCSC Ensembl
Mir-154-P5 CM054694.2: 105456559-105456614 [+] UCSC Ensembl
Mir-154-P6a-v1 CM054694.2: 105456721-105456776 [+] UCSC Ensembl
Mir-154-P6a-v2 CM054694.2: 105456721-105456776 [+] UCSC Ensembl
Mir-154-P7 CM054694.2: 105457010-105457067 [+] UCSC Ensembl
Mir-154-P8a CM054694.2: 105457771-105457830 [+] UCSC Ensembl
Mir-154-P8b CM054694.2: 105458088-105458147 [+] UCSC Ensembl
Mir-154-P9 CM054694.2: 105460648-105460703 [+] UCSC Ensembl
Mir-154-P10 CM054694.2: 105461069-105461125 [+] UCSC Ensembl
Mir-154-P11 CM054694.2: 105463007-105463064 [+] UCSC Ensembl
Mir-154-P12 CM054694.2: 105464778-105464835 [+] UCSC Ensembl
Mir-376-P1 CM054694.2: 105471348-105471405 [+] UCSC Ensembl
Mir-376-P2 CM054694.2: 105471685-105471742 [+] UCSC Ensembl
Mir-376-P3 CM054694.2: 105472074-105472131 [+] UCSC Ensembl
Mir-154-P14 CM054694.2: 105472227-105472282 [+] UCSC Ensembl
Mir-376-P4 CM054694.2: 105472453-105472510 [+] UCSC Ensembl
Mir-376-P5 CM054694.2: 105472781-105472838 [+] UCSC Ensembl
Mir-154-P16a CM054694.2: 105474982-105475041 [+] UCSC Ensembl
Mir-154-P16b CM054694.2: 105476203-105476262 [+] UCSC Ensembl
Mir-154-P17 CM054694.2: 105477924-105477986 [+] UCSC Ensembl
Mir-154-P18 CM054694.2: 105478464-105478521 [+] UCSC Ensembl
Mir-154-P19 CM054694.2: 105479320-105479383 [+] UCSC Ensembl
Mir-154-P20 CM054694.2: 105479902-105479960 [+] UCSC Ensembl
Mir-544 CM054694.2: 105480677-105480734 [+] UCSC Ensembl
Mir-154-P21 CM054694.2: 105481573-105481632 [+] UCSC Ensembl
Mir-154-P23 CM054694.2: 105484476-105484533 [+] UCSC Ensembl
Mir-154-P24 CM054694.2: 105486315-105486372 [+] UCSC Ensembl
Mir-134 CM054694.2: 105486693-105486754 [+] UCSC Ensembl
Mir-154-P25 CM054694.2: 105487426-105487484 [+] UCSC Ensembl
Mir-154-P6b CM054694.2: 105488232-105488288 [+] UCSC Ensembl
Mir-154-P26 CM054694.2: 105491784-105491841 [+] UCSC Ensembl
Mir-154-P28 CM054694.2: 105492622-105492675 [+] UCSC Ensembl
Mir-154-P29 CM054694.2: 105494088-105494147 [+] UCSC Ensembl
Mir-541 CM054694.2: 105496524-105496589 [+] UCSC Ensembl
Mir-154-P30 CM054694.2: 105497334-105497387 [+] UCSC Ensembl
Mir-154-P31 CM054694.2: 105497485-105497539 [+] UCSC Ensembl
Mir-154-P32 CM054694.2: 105497626-105497681 [+] UCSC Ensembl
Mir-154-P33 CM054694.2: 105497945-105498001 [+] UCSC Ensembl
Mir-154-P34 CM054694.2: 105498741-105498796 [+] UCSC Ensembl

Seed

Precursor
(pre-Mir +30nt flank)

GGGCUCUCUGAGCUCGUGCCAACGUCAGGGAAAGGAUUCUGCUGUCGGUCCCACUCCAAAGUUUACAGAAUGGGUGGUGGGCACAGAAUCCGGACUCUGCUUGUGGCAUCCAUCGUCUGGCCCGAU

Get precursor sequence

Structure

        10          20        30        40        50        60    
GGGCUCUCUGAGCUCGU--|   ACGU     AAA        C    G UC     CCAAAGUU 
                   GCCA    CAGGG   GGAUUCUG UGUC G  CCACU        \
                   CGGU    GUCUC   CCUAAGAC ACGG U  GGUGG        U
UAGCCCGGUCUGCUACCUA^   GUUC     AGG        -    G --     GUAAGACA 
    120       110       100        90         80          70

Deep sequencing

Go to detailed chart

3' NTU

No

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

-

+

Br	Br	Li	Li

Star sequence

Pab-Mir-541_5p*

mirBase accession

None

Sequence

0- AAAGGAUUCUGCUGUCGGUCCCACU -25

Get sequence

Mature sequence

Pab-Mir-541_3p

mirBase accession

None

Sequence

44- UGGUGGGCACAGAAUCCGGACU -66

Get sequence