MirGeneDB 3.0

MirGeneDB ID

Cja-Mir-541

Family name

MIR-541 (all species)

Species

White-tufted-ear marmoset (Callithrix jacchus)

MiRBase ID

Paralogues

Orthologues

Bta-Mir-541 Cpo-Mir-541 Dno-Mir-541 Eca-Mir-541 Ete-Mir-541 Hsa-Mir-541 Laf-Mir-541 Mml-Mir-541 Mmr-Mir-541 Mmu-Mir-541 Ocu-Mir-541 Pab-Mir-541 Rno-Mir-541

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)

CM021924.1: 131879396-131879461 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-541)

Mir-154-P1 CM021924.1: 131834922-131834980 [+] UCSC Ensembl
Mir-154-P2 CM021924.1: 131836182-131836237 [+] UCSC Ensembl
Mir-154-P3 CM021924.1: 131836643-131836697 [+] UCSC Ensembl
Mir-154-P4 CM021924.1: 131837844-131837900 [+] UCSC Ensembl
Mir-154-P5 CM021924.1: 131838404-131838459 [+] UCSC Ensembl
Mir-154-P6a CM021924.1: 131838566-131838621 [+] UCSC Ensembl
Mir-154-P7 CM021924.1: 131838833-131838890 [+] UCSC Ensembl
Mir-154-P8a CM021924.1: 131839579-131839638 [+] UCSC Ensembl
Mir-154-P9 CM021924.1: 131842383-131842438 [+] UCSC Ensembl
Mir-154-P10 CM021924.1: 131842799-131842855 [+] UCSC Ensembl
Mir-154-P11 CM021924.1: 131846833-131846890 [+] UCSC Ensembl
Mir-154-P12 CM021924.1: 131848844-131848901 [+] UCSC Ensembl
Mir-376-P1 CM021924.1: 131853631-131853688 [+] UCSC Ensembl
Mir-376-P2 CM021924.1: 131853973-131854030 [+] UCSC Ensembl
Mir-376-P3 CM021924.1: 131854407-131854464 [+] UCSC Ensembl
Mir-154-P14 CM021924.1: 131854560-131854615 [+] UCSC Ensembl
Mir-376-P4 CM021924.1: 131854787-131854844 [+] UCSC Ensembl
Mir-376-P5 CM021924.1: 131855098-131855155 [+] UCSC Ensembl
Mir-154-P16a CM021924.1: 131857425-131857482 [+] UCSC Ensembl
Mir-154-P16b CM021924.1: 131858660-131858717 [+] UCSC Ensembl
Mir-154-P17 CM021924.1: 131860356-131860418 [+] UCSC Ensembl
Mir-154-P18 CM021924.1: 131860896-131860953 [+] UCSC Ensembl
Mir-154-P19 CM021924.1: 131861757-131861820 [+] UCSC Ensembl
Mir-154-P20 CM021924.1: 131862337-131862395 [+] UCSC Ensembl
Mir-544 CM021924.1: 131863091-131863148 [+] UCSC Ensembl
Mir-154-P21 CM021924.1: 131863995-131864054 [+] UCSC Ensembl
Mir-154-P22 CM021924.1: 131866453-131866506 [+] UCSC Ensembl
Mir-154-P23 CM021924.1: 131866878-131866935 [+] UCSC Ensembl
Mir-154-P24 CM021924.1: 131868718-131868774 [+] UCSC Ensembl
Mir-134 CM021924.1: 131869096-131869156 [+] UCSC Ensembl
Mir-154-P25 CM021924.1: 131869829-131869887 [+] UCSC Ensembl
Mir-154-P6b CM021924.1: 131870624-131870680 [+] UCSC Ensembl
Mir-154-P26 CM021924.1: 131874498-131874555 [+] UCSC Ensembl
Mir-154-P28 CM021924.1: 131875373-131875426 [+] UCSC Ensembl
Mir-154-P29 CM021924.1: 131876823-131876882 [+] UCSC Ensembl
Mir-541 CM021924.1: 131879396-131879461 [+] UCSC Ensembl
Mir-154-P30 CM021924.1: 131880204-131880257 [+] UCSC Ensembl
Mir-154-P31 CM021924.1: 131880354-131880408 [+] UCSC Ensembl
Mir-154-P32 CM021924.1: 131880494-131880549 [+] UCSC Ensembl
Mir-154-P33 CM021924.1: 131880804-131880860 [+] UCSC Ensembl
Mir-154-P34 CM021924.1: 131881592-131881647 [+] UCSC Ensembl

Seed

Precursor
(pre-Mir +30nt flank)

GAGUUCUCCGAACUCACGCCAACGUCAGGGAAAGGAUUCUGCUGUCGGUCCCACUCCAAAGUUCACAGAAUGGGUGGUGGGCACAGAAUCCGGACUCUGCUGGUGGCAUCCGUCGUCCGGCCCGAC

Get precursor sequence

Structure

        10          20        30        40          50        60  
GAGUUCUCCGAACUCAC--    A  U     AAA        C    G U--|  ACUCCAAAG 
                   GCCA CG CAGGG   GGAUUCUG UGUC G   CCC         \
                   CGGU GU GUCUC   CCUAAGAC ACGG U   GGG         U
CAGCCCGGCCUGCUGCCUA    G  C     AGG        -    G GGU^  UAAGACACU 
    120       110       100        90         80        70

Deep sequencing

3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

-

+

To

Star sequence

Cja-Mir-541_5p* (predicted)

mirBase accession

None

Sequence

0- AAAGGAUUCUGCUGUCGGUCCC -22

Get sequence

Mature sequence

Cja-Mir-541_3p (predicted)

mirBase accession

None

Sequence

44- UGGUGGGCACAGAAUCCGGACU -66

Get sequence