MirGeneDB 3.0

MirGeneDB ID

Laf-Mir-541

Family name

MIR-541 (all species)

Species

African bush elephant (Loxodonta africana)

MiRBase ID

Paralogues

Orthologues

Bta-Mir-541 Cja-Mir-541 Cpo-Mir-541 Dno-Mir-541 Eca-Mir-541 Ete-Mir-541 Hsa-Mir-541 Mml-Mir-541 Mmr-Mir-541 Mmu-Mir-541 Ocu-Mir-541 Pab-Mir-541 Rno-Mir-541

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCA_000001905.1_Loxafr3.0)

GL010036.1: 75517877-75517942 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-541)

Mir-154-P34 GL010036.1: 75515670-75515725 [-] UCSC Ensembl
Mir-154-P6c GL010036.1: 75515924-75515978 [-] UCSC Ensembl
Mir-154-P33 GL010036.1: 75516442-75516497 [-] UCSC Ensembl
Mir-154-P32 GL010036.1: 75516745-75516800 [-] UCSC Ensembl
Mir-154-P31 GL010036.1: 75516896-75516950 [-] UCSC Ensembl
Mir-154-P30 GL010036.1: 75517046-75517099 [-] UCSC Ensembl
Mir-541 GL010036.1: 75517877-75517942 [-] UCSC Ensembl
Mir-154-P29 GL010036.1: 75519883-75519942 [-] UCSC Ensembl
Mir-154-P28 GL010036.1: 75521503-75521556 [-] UCSC Ensembl
Mir-154-P27 GL010036.1: 75522076-75522136 [-] UCSC Ensembl
Mir-154-P26 GL010036.1: 75522398-75522455 [-] UCSC Ensembl
Mir-154-P6b GL010036.1: 75526418-75526474 [-] UCSC Ensembl
Mir-154-P25 GL010036.1: 75527246-75527302 [-] UCSC Ensembl
Mir-154-P24 GL010036.1: 75528356-75528413 [-] UCSC Ensembl
Mir-154-P23 GL010036.1: 75531976-75532033 [-] UCSC Ensembl
Mir-154-P22 GL010036.1: 75532426-75532479 [-] UCSC Ensembl
Mir-154-P21 GL010036.1: 75534811-75534870 [-] UCSC Ensembl
Mir-544 GL010036.1: 75535725-75535783 [-] UCSC Ensembl
Mir-154-P20 GL010036.1: 75536489-75536547 [-] UCSC Ensembl
Mir-154-P19 GL010036.1: 75537069-75537132 [-] UCSC Ensembl
Mir-154-P18 GL010036.1: 75537837-75537894 [-] UCSC Ensembl
Mir-154-P17 GL010036.1: 75538378-75538440 [-] UCSC Ensembl
Mir-154-P16 GL010036.1: 75541362-75541421 [-] UCSC Ensembl
Mir-154-P15 GL010036.1: 75542647-75542709 [-] UCSC Ensembl
Mir-376-P5 GL010036.1: 75543242-75543299 [-] UCSC Ensembl
Mir-376-P4 GL010036.1: 75543582-75543639 [-] UCSC Ensembl
Mir-376-P3 GL010036.1: 75543962-75544019 [-] UCSC Ensembl
Mir-376-P2 GL010036.1: 75544329-75544386 [-] UCSC Ensembl
Mir-376-P1 GL010036.1: 75544697-75544754 [-] UCSC Ensembl
Mir-154-P12 GL010036.1: 75550220-75550277 [-] UCSC Ensembl
Mir-154-P11 GL010036.1: 75552026-75552083 [-] UCSC Ensembl
Mir-154-P10 GL010036.1: 75553932-75553988 [-] UCSC Ensembl
Mir-154-P9 GL010036.1: 75554345-75554400 [-] UCSC Ensembl
Mir-154-P8 GL010036.1: 75557501-75557560 [-] UCSC Ensembl
Mir-154-P7 GL010036.1: 75558250-75558307 [-] UCSC Ensembl
Mir-154-P6a GL010036.1: 75558547-75558602 [-] UCSC Ensembl
Mir-154-P5 GL010036.1: 75558709-75558763 [-] UCSC Ensembl
Mir-154-P4 GL010036.1: 75559248-75559304 [-] UCSC Ensembl
Mir-154-P3 GL010036.1: 75560482-75560536 [-] UCSC Ensembl
Mir-154-P2 GL010036.1: 75560939-75560994 [-] UCSC Ensembl
Mir-154-P1 GL010036.1: 75562213-75562271 [-] UCSC Ensembl

Seed

Precursor
(pre-Mir +30nt flank)

GGGCUUUCAGAACUCAUGCCAAUGUCAGAAAAAGGAUUCUGCUGUCGGUCCCACUCCAAAUGUCUCAGAAUGGGUGGUGGGCACAGAAUCCGGACUCUGCUUGUGGCACAUGUCAACAGGCCCAUG

Get precursor sequence

Structure

        10          20         30        40        50        60    
GGGCUUUCAGAACUCAU--    AU-|U    AAAA        C    G UC     CCAAAUGU 
                   GCCA   G CAGA    GGAUUCUG UGUC G  CCACU        \
                   CGGU   C GUCU    CCUAAGAC ACGG U  GGUGG        C
GUACCCGGACAACUGUACA    GUU^-    CAGG        -    G --     GUAAGACU 
    120       110       100         90         80          70

Deep sequencing

3' NTU

Unknown

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

-

+

Wh

Mature sequence

Laf-Mir-541_5p (predicted)

mirBase accession

None

Sequence

0- AAAGGAUUCUGCUGUCGGUCCCACU -25

Get sequence

Star sequence

Laf-Mir-541_3p* (predicted)

mirBase accession

None

Sequence

44- UGGUGGGCACAGAAUCCGGACU -66

Get sequence