MirGeneDB 3.0
MirGeneDB ID

Pab-Mir-154-P25

Family name MIR-154 (all species)
Species Sumatran orangutan (Pongo abelii)
MiRBase ID
Paralogues Pab-Mir-154-P1  Pab-Mir-154-P2-v1  Pab-Mir-154-P3-v1  Pab-Mir-154-P4  Pab-Mir-154-P5  Pab-Mir-154-P6a-v1  Pab-Mir-154-P6b  Pab-Mir-154-P7  Pab-Mir-154-P8a  Pab-Mir-154-P8b  Pab-Mir-154-P9  Pab-Mir-154-P10  Pab-Mir-154-P11  Pab-Mir-154-P12  Pab-Mir-154-P14  Pab-Mir-154-P16a  Pab-Mir-154-P16b  Pab-Mir-154-P17  Pab-Mir-154-P18  Pab-Mir-154-P19  Pab-Mir-154-P20  Pab-Mir-154-P21  Pab-Mir-154-P23  Pab-Mir-154-P24  Pab-Mir-154-P26  Pab-Mir-154-P28  Pab-Mir-154-P29  Pab-Mir-154-P30  Pab-Mir-154-P31  Pab-Mir-154-P32  Pab-Mir-154-P33  Pab-Mir-154-P34 
Orthologues Bta-Mir-154-P25  Cfa-Mir-154-P25  Cja-Mir-154-P25  Dno-Mir-154-P25  Eca-Mir-154-P25  Hsa-Mir-154-P25  Laf-Mir-154-P25  Mml-Mir-154-P25  Mmr-Mir-154-P25  Mmu-Mir-154-P25  Ocu-Mir-154-P25  Rno-Mir-154-P25 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)		 CM054694.2: 105487426-105487484 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-154-P25)		 Mir-154-P1 CM054694.2: 105453044-105453102 [+] UCSC Ensembl
Mir-154-P2-v2 CM054694.2: 105454312-105454369 [+] UCSC Ensembl
Mir-154-P2-v1 CM054694.2: 105454313-105454368 [+] UCSC Ensembl
Mir-154-P3-v1 CM054694.2: 105454769-105454823 [+] UCSC Ensembl
Mir-154-P3-v2 CM054694.2: 105454770-105454822 [+] UCSC Ensembl
Mir-154-P4 CM054694.2: 105455995-105456051 [+] UCSC Ensembl
Mir-154-P5 CM054694.2: 105456559-105456614 [+] UCSC Ensembl
Mir-154-P6a-v1 CM054694.2: 105456721-105456776 [+] UCSC Ensembl
Mir-154-P6a-v2 CM054694.2: 105456721-105456776 [+] UCSC Ensembl
Mir-154-P7 CM054694.2: 105457010-105457067 [+] UCSC Ensembl
Mir-154-P8a CM054694.2: 105457771-105457830 [+] UCSC Ensembl
Mir-154-P8b CM054694.2: 105458088-105458147 [+] UCSC Ensembl
Mir-154-P9 CM054694.2: 105460648-105460703 [+] UCSC Ensembl
Mir-154-P10 CM054694.2: 105461069-105461125 [+] UCSC Ensembl
Mir-154-P11 CM054694.2: 105463007-105463064 [+] UCSC Ensembl
Mir-154-P12 CM054694.2: 105464778-105464835 [+] UCSC Ensembl
Mir-376-P1 CM054694.2: 105471348-105471405 [+] UCSC Ensembl
Mir-376-P2 CM054694.2: 105471685-105471742 [+] UCSC Ensembl
Mir-376-P3 CM054694.2: 105472074-105472131 [+] UCSC Ensembl
Mir-154-P14 CM054694.2: 105472227-105472282 [+] UCSC Ensembl
Mir-376-P4 CM054694.2: 105472453-105472510 [+] UCSC Ensembl
Mir-376-P5 CM054694.2: 105472781-105472838 [+] UCSC Ensembl
Mir-154-P16a CM054694.2: 105474982-105475041 [+] UCSC Ensembl
Mir-154-P16b CM054694.2: 105476203-105476262 [+] UCSC Ensembl
Mir-154-P17 CM054694.2: 105477924-105477986 [+] UCSC Ensembl
Mir-154-P18 CM054694.2: 105478464-105478521 [+] UCSC Ensembl
Mir-154-P19 CM054694.2: 105479320-105479383 [+] UCSC Ensembl
Mir-154-P20 CM054694.2: 105479902-105479960 [+] UCSC Ensembl
Mir-544 CM054694.2: 105480677-105480734 [+] UCSC Ensembl
Mir-154-P21 CM054694.2: 105481573-105481632 [+] UCSC Ensembl
Mir-154-P23 CM054694.2: 105484476-105484533 [+] UCSC Ensembl
Mir-154-P24 CM054694.2: 105486315-105486372 [+] UCSC Ensembl
Mir-134 CM054694.2: 105486693-105486754 [+] UCSC Ensembl
Mir-154-P25 CM054694.2: 105487426-105487484 [+] UCSC Ensembl
Mir-154-P6b CM054694.2: 105488232-105488288 [+] UCSC Ensembl
Mir-154-P26 CM054694.2: 105491784-105491841 [+] UCSC Ensembl
Mir-154-P28 CM054694.2: 105492622-105492675 [+] UCSC Ensembl
Mir-154-P29 CM054694.2: 105494088-105494147 [+] UCSC Ensembl
Mir-541 CM054694.2: 105496524-105496589 [+] UCSC Ensembl
Mir-154-P30 CM054694.2: 105497334-105497387 [+] UCSC Ensembl
Mir-154-P31 CM054694.2: 105497485-105497539 [+] UCSC Ensembl
Mir-154-P32 CM054694.2: 105497626-105497681 [+] UCSC Ensembl
Mir-154-P33 CM054694.2: 105497945-105498001 [+] UCSC Ensembl
Mir-154-P34 CM054694.2: 105498741-105498796 [+] UCSC Ensembl
Seed GAGGCUG
Precursor
(pre-Mir +30nt flank)		 
CUCACCAGUGUUCAUGUGUGGUACUUGGAGAGAGGCUGGCCGUGAUGAAUUCGAUUCAUCAAAGCGAGUCAUACACGGCUCUCCUCUCUUUUAGUGUCAAAUUCUGCCUCAGAGGGCUU
Get precursor sequence
Structure
        10          20        30        40         50         
CUCACCAGUGUUCAUGUG--  GU   UG        CU       -|   A    AUUCA 
                    UG  ACU  GAGAGAGG  GGCCGUG AUGA UUCG     \
                    AC  UGA  UUCUCUCC  UCGGCAC UACU GAGC     U
UUCGGGAGACUCCGUCUUAA  UG   UU        UC       A^   -    GAAAC 
       110       100        90        80        70         60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
Br Br Li Li
Mature sequence

Pab-Mir-154-P25_5p
mirBase accessionNone
Sequence 
0- AGAGGCUGGCCGUGAUGAAUUCG -23
Get sequence
Star sequence

Pab-Mir-154-P25_3p*
mirBase accessionNone
Sequence 
37- GUCAUACACGGCUCUCCUCUCU -59
Get sequence