Mir-92-o128

MirGeneDB ID

Llo-Mir-92-o128

Family name

MIR-92 (all species)

Species

Bootlace worm (Lineus longissimus)

MiRBase ID

Paralogues

Llo-Mir-92-o126 Llo-Mir-92-o127 Llo-Mir-92-o129 Llo-Mir-92-o130 Llo-Mir-92-o131

Orthologues

Asu-Mir-92 Cel-Mir-92 Esc-Mir-92 Gsp-Mir-92 Hmi-Mir-92 Isc-Mir-92 Obi-Mir-92 Sme-Mir-92

Node of Origin (locus)

Lineidae

Node of Origin (family)

Bilateria

Genome context
(GCA_910592395.2_tnLinLong1)

OU343005.1: 13162433-13162490 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-92-o128)

Mir-92-o126 OU343005.1: 13161856-13161915 [+] Ensembl
Mir-92-o127 OU343005.1: 13162175-13162233 [+] Ensembl
Mir-92-o128 OU343005.1: 13162433-13162490 [+] Ensembl
Mir-92-o129 OU343005.1: 13162806-13162859 [+] Ensembl

Seed

AUUGCAC

Precursor
(pre-Mir +30nt flank)

CCUCUCAUUGGGAGAUUGGAACUGACCUGAAGGUCGUGAAGAGGGCAAUGUUUGUUAAAAUAUGCAAAUUGCACUCGUCCCGGCCUGCCAGGUCUGUUCUUUAGCCUCGCUGUGACCA

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Structure

        10         20        30         40        50        
CCUCUCAUUGGGAGAUU-     U      A-|     U  A   G     GUUUGUUA 
                  GGAAC GACCUG  AGGUCG GA GAG GCAAU        A
                  UCUUG CUGGAC  UCCGGC CU CUC CGUUA        A
ACCAGUGUCGCUCCGAUU     U      CG^     C  G   A     AACGUAUA 
      110       100        90        80        70        60

Deep sequencing

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Comment

It is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data.

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

No	No	No	No	No	No

Star sequence

Llo-Mir-92-o128_5p* (predicted)

mirBase accession

None

Sequence

0- AGGUCGUGAAGAGGGCAAUGUUU -23

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Mature sequence

Llo-Mir-92-o128_3p

mirBase accession

None

Sequence

36- AAUUGCACUCGUCCCGGCCUGC -58

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