| MirGeneDB ID | Lch-Mir-145 |
|---|---|
| Family name | MIR-145 (all species) |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Aca-Mir-145 Ami-Mir-145 Bta-Mir-145 Cfa-Mir-145 Cja-Mir-145 Cli-Mir-145 Cmi-Mir-145 Cpi-Mir-145 Cpo-Mir-145 Dno-Mir-145 Dre-Mir-145 Ebu-Mir-145 Eca-Mir-145 Ete-Mir-145 Gga-Mir-145 Gja-Mir-145 Gmo-Mir-145 Hsa-Mir-145 Laf-Mir-145 Loc-Mir-145 Mal-Mir-145 Mdo-Mir-145 Mml-Mir-145 Mmr-Mir-145 Mmu-Mir-145 Mun-Mir-145 Neu-Mir-145 Oan-Mir-145 Ocu-Mir-145 Pab-Mir-145 Pbv-Mir-145 Pma-Mir-145 Rno-Mir-145 Sha-Mir-145 Spt-Mir-145 Sto-Mir-145 Tgu-Mir-145 Xla-Mir-145-P1 Xla-Mir-145-P2 Xtr-Mir-145 |
| Node of Origin (locus) | Vertebrata |
| Node of Origin (family) | Vertebrata |
| Genome context (LatCha1_add) |
JH127531.1: 332767-332826 [+] Ensembl |
| Clustered miRNAs (< 50kb from Mir-145) |
Mir-143
JH127531.1: 330353-330407 [+]
Ensembl
Mir-145 JH127531.1: 332767-332826 [+] Ensembl |
| Seed | UCCAGUU |
| Precursor (pre-Mir +30nt flank) |
CUCUGACCUCAAACUGACCUUGUCCUCGGGGUCCAGUUUUCCCAGGAAUCCCUUGGGUGCUAAAAAGGGGAUUCCUGGAAAUACUGUUCUUGGGGGCAAGGCUUUGCAGCUGGAAACCAAGet precursor sequence |
| Structure | 10 20 30 40 50 CUCUGACCUCAAACUGA--| UC U C UGGGUG CCUUGUCCUCGGGG CAGU UU CCAGGAAUCCCU \ GGAACGGGGGUUCU GUCA AA GGUCCUUAGGGG C AACCAAAGGUCGACGUUUC^ U- U A AAAAAU . 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Mature sequence | Lch-Mir-145_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- GUCCAGUUUUCCCAGGAAUCCCU -23
Get sequence
|
| Star sequence | Lch-Mir-145_3p* (predicted) |
| mirBase accession | None |
| Sequence |
38- GGAUUCCUGGAAAUACUGUUCU -60
Get sequence
|
