MirGeneDB 3.0
MirGeneDB ID

Ami-Mir-145

Family name MIR-145 (all species)
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-145
Paralogues
Orthologues Aca-Mir-145  Bta-Mir-145  Cfa-Mir-145  Cja-Mir-145  Cli-Mir-145  Cmi-Mir-145  Cpi-Mir-145  Cpo-Mir-145  Dno-Mir-145  Dre-Mir-145  Ebu-Mir-145  Eca-Mir-145  Ete-Mir-145  Gga-Mir-145  Gja-Mir-145  Gmo-Mir-145  Hsa-Mir-145  Laf-Mir-145  Lch-Mir-145  Loc-Mir-145  Mal-Mir-145  Mdo-Mir-145  Mml-Mir-145  Mmr-Mir-145  Mmu-Mir-145  Mun-Mir-145  Neu-Mir-145  Oan-Mir-145  Ocu-Mir-145  Pab-Mir-145  Pbv-Mir-145  Pma-Mir-145  Rno-Mir-145  Sha-Mir-145  Spt-Mir-145  Sto-Mir-145  Tgu-Mir-145  Xla-Mir-145-P1  Xla-Mir-145-P2  Xtr-Mir-145 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017713851.1: 13478308-13478367 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-145)		 Mir-145 NW_017713851.1: 13478308-13478367 [-] UCSC
Mir-143 NW_017713851.1: 13479126-13479180 [-] UCSC
Seed UCCAGUU
Precursor
(pre-Mir +30nt flank)		 
AGAAGGUCCUCUCCUUGCUGUGUCCUCAGGGUCCAGUUUUCCCAGGAAUCCCUUGGGCACUGUGUUGGGGAUUCCUGGAAAUACUGUUCUUGGGGCCGUGGCUCAGCAGCUGGAAAAGGC
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Structure
        10          20        30        40        50          
AGAAGGUCCUCUCCUUG--|UG  U        UC    U  C            UGGGCA 
                   C  UG CCUCAGGG  CAGU UU CCAGGAAUCCCU      \
                   G  GC GGGGUUCU  GUCA AA GGUCCUUAGGGG      C
CGGAAAAGGUCGACGACUC^GU  C        U-    U  A            UUGUGU 
.       110       100        90         80        70
Deep sequencing
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CommentThere is a second Dicer cut -2 on both arms.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Mature sequence

Ami-Mir-145_5p
mirBase accessionMIMAT0038169
Sequence 
0- GUCCAGUUUUCCCAGGAAUCCCU -23
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Star sequence

Ami-Mir-145_3p*
mirBase accessionMIMAT0038170
Sequence 
38- GGAUUCCUGGAAAUACUGUUCU -60
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