MirGeneDB 3.0
MirGeneDB ID

Laf-Mir-133-P1

Family name MIR-133 (all species)
Species African bush elephant (Loxodonta africana)
MiRBase ID
Paralogues Laf-Mir-133-P1-v1  Laf-Mir-133-P2  Laf-Mir-133-P3-v1 
Orthologues Aae-Mir-133  Aca-Mir-133-P1-v1  Aga-Mir-133  Ami-Mir-133-P1-v1  Asu-Mir-133  Bge-Mir-133  Bta-Mir-133-P1-v1  Cbr-Mir-133  Cel-Mir-133  Cfa-Mir-133-P1-v1  Cin-Mir-133  Cja-Mir-133-P1  Cli-Mir-133-P1-v1  Cmi-Mir-133-P1-v1  Cpi-Mir-133-P1-v1  Cpo-Mir-133-P1-v1  Cte-Mir-133  Dan-Mir-133  Dgr-Mir-133  Dlo-Mir-133  Dma-Mir-133  Dme-Mir-133  Dmo-Mir-133  Dno-Mir-133-P1-v1  Dpu-Mir-133  Dre-Mir-133-P1-v1  Dsi-Mir-133  Dya-Mir-133  Eba-Mir-133  Eca-Mir-133-P1-v1  Efe-Mir-133  Egr-Mir-133  Esc-Mir-133  Ete-Mir-133-P1-v1  Gga-Mir-133-P1-v1  Gja-Mir-133-P1-v1  Gmo-Mir-133-P1-v1  Gpa-Mir-133  Gsp-Mir-133  Hme-Mir-133  Hru-Mir-133  Hsa-Mir-133-P1-v1  Isc-Mir-133  Lan-Mir-133  Lch-Mir-133-P1  Lgi-Mir-133  Lhy-Mir-133  Llo-Mir-133  Loc-Mir-133-P1-v1  Mal-Mir-133-P1-v1  Mdo-Mir-133-P1-v1  Mgi-Mir-133  Mml-Mir-133-P1-v1  Mmr-Mir-133-P1-v1  Mmu-Mir-133-P1-v1  Mom-Mir-133  Mun-Mir-133-P1-v1  Neu-Mir-133-P1-v1  Oan-Mir-133-P1-v1  Obi-Mir-133  Ocu-Mir-133-P1-v1  Ofu-Mir-133  Ovu-Mir-133  Pab-Mir-133-P1  Pau-Mir-133  Pbv-Mir-133-P1-v1  Pca-Mir-133  Pcr-Mir-133  Pdu-Mir-133  Pma-Mir-133-o1-v1  Pve-Mir-133  Rno-Mir-133-P1-v1  Rph-Mir-133  Sha-Mir-133-P1-v1  Sma-Mir-133  Snu-Mir-133  Spt-Mir-133-P1  Spu-Mir-133  Sto-Mir-133-P1-v1  Tca-Mir-133  Tgu-Mir-133-P1-v1  Tni-Mir-133-P1-v1  Tur-Mir-133  War-Mir-133  Xbo-Mir-133  Xla-Mir-133-P1a-v1  Xla-Mir-133-P1b-v1  Xtr-Mir-133-P1-v1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCA_000001905.1_Loxafr3.0)		 GL010031.1: 80399103-80399162 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-133-P1-v2)		 Mir-1-P1 GL010031.1: 80395761-80395821 [+] UCSC Ensembl
Mir-133-P1-v1 GL010031.1: 80399103-80399162 [+] UCSC Ensembl
Mir-133-P1-v2 GL010031.1: 80399103-80399162 [+] UCSC Ensembl
Variant

Laf-Mir-133-P1-v2
Seed UGGUCCC
Precursor
(pre-Mir +30nt flank)		 
CAAAGUAGCAGCACUGCAAUGCUUUGCUAGAGCUGGUAAAAUGGAACCAAAUCGCCUCUUCAAUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUAUGCAUUGAUUACUACAGGACAGCCA
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Structure
        10          20        30        40        50         
CAAAGUAGCAGCACUGC--|    UUU    G       AA  U  A       CGCCUC 
                   AAUGC   GCUA AGCUGGU  AA GG ACCAAAU      U
                   UUACG   CGAU UCGACCA  UU CC UGGUUUA      U
ACCGACAGGACAUCAUUAG^    UAU    G       AC  C  C       GGUAAC 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Wh
Star sequence

Laf-Mir-133-P1-v2_5p*
mirBase accessionNone
Sequence 
0- AGCUGGUAAAAUGGAACCAAAU -22
Get sequence
Mature sequence

Laf-Mir-133-P1-v2_3p
mirBase accessionNone
Sequence 
38- UUGGUCCCCUUCAACCAGCUGU -60
Get sequence
Variant

Laf-Mir-133-P1-v1
Seed UUGGUCC
Precursor
(pre-Mir +30nt flank)		 
CAAAGUAGCAGCACUGCAAUGCUUUGCUAGAGCUGGUAAAAUGGAACCAAAUCGCCUCUUCAAUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUAUGCAUUGAUUACUACAGGACAGCCA
Get precursor sequence
Structure
        10          20        30        40        50         
CAAAGUAGCAGCACUGC--|    UUU    G       AA  U  A        GCCUC 
                   AAUGC   GCUA AGCUGGU  AA GG ACCAAAUC     U
                   UUACG   CGAU UCGACCA  UU CC UGGUUUAG     U
ACCGACAGGACAUCAUUAG^    UAU    G       AC  C  C        GUAAC 
.       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Wh
Star sequence

Laf-Mir-133-P1-v1_5p*
mirBase accessionNone
Sequence 
0- AGCUGGUAAAAUGGAACCAAAUC -23
Get sequence
Mature sequence

Laf-Mir-133-P1-v1_3p
mirBase accessionNone
Sequence 
37- UUUGGUCCCCUUCAACCAGCUGU -60
Get sequence