Mir-101-P1-v2

MirGeneDB ID

Gga-Mir-101-P1

Family name

MIR-101 (all species)

Species

Chicken (Gallus gallus)

MiRBase ID

gga-mir-101-2

Paralogues

Gga-Mir-101-P1-v1 Gga-Mir-101-P2-v1

Orthologues

Aca-Mir-101-P1-v1 Ami-Mir-101-P1-v1 Bta-Mir-101-P1-v1 Cfa-Mir-101-P1-v1 Cja-Mir-101-P1-v1 Cli-Mir-101-P1-v1 Cmi-Mir-101-P1-v1 Cpi-Mir-101-P1-v1 Cpo-Mir-101-P1-v1 Dno-Mir-101-P1-v1 Dre-Mir-101-P1-v1 Eca-Mir-101-P1-v1 Ete-Mir-101-P1-v1 Gja-Mir-101-P1-v1 Gmo-Mir-101-P1-v1 Hsa-Mir-101-P1-v1 Laf-Mir-101-P1-v1 Lch-Mir-101-P1 Loc-Mir-101-P1-v1 Mal-Mir-101-P1-v1 Mdo-Mir-101-P1-v1 Mml-Mir-101-P1-v1 Mmr-Mir-101-P1-v1 Mmu-Mir-101-P1-v1 Mun-Mir-101-P1-v1 Oan-Mir-101-P1-v1 Ocu-Mir-101-P1-v1 Pab-Mir-101-P1-v1 Pbv-Mir-101-P1-v1 Rno-Mir-101-P1-v1 Sha-Mir-101-P1-v1 Spt-Mir-101-P1c Spt-Mir-101-P1d Sto-Mir-101-P1-v1 Tgu-Mir-101-P1-v1 Tni-Mir-101-P1-v1 Xla-Mir-101-P1a-v1 Xla-Mir-101-P1b-v1 Xtr-Mir-101-P1-v1

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Vertebrata

Genome context
(Gallus_gallus.GRCg6a)

8: 28612657-28612713 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-101-P1-v2)

Mir-101-P1-v1 8: 28612656-28612714 [-] UCSC Ensembl
Mir-101-P1-v2 8: 28612657-28612713 [-] UCSC Ensembl

Variant

Gga-Mir-101-P1-v2

Seed

UACAGUA

Precursor
(pre-Mir +30nt flank)

GGCCACGAUGACUGACAGGCUGCCCUGGCUCAGUUAUCACAGUGCUGAUGCUGUCUCUUGUAAAGGUACAGUACUGUGAUAACUGAAGGAUGGCAGCCAUCUGAGCUUCAGAGGCCC

Get precursor sequence

Structure

        10          20        30        40        50        
GGCCACGAUGACUGACA--|      CUGGC                  A    GUCUC 
                   GGCUGCC     UCAGUUAUCACAGUGCUG UGCU     U
                   CCGACGG     AGUCAAUAGUGUCAUGAC AUGG     U
CCCGGAGACUUCGAGUCUA^      UAGGA                  -    AAAUG 
     110       100        90        80        70         60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Ad	Ad	Ad	Br	Br	Ce	Ce	Ce	Ce	Gg	He	He	Hy	Hy	Ki	Ki	Li	Li	Lu	Lu	Ov	Pr	Pr	Sc	Sc	Sp	Sp	Te

Star sequence

Gga-Mir-101-P1-v2_5p*

mirBase accession

MIMAT0031077

Sequence

0- CAGUUAUCACAGUGCUGAUGCU -22

Get sequence

Proposed targets

TargetScanVert: gga-miR-101-2-5p
miRDB: MIMAT0031077

Mature sequence

Gga-Mir-101-P1-v2_3p

mirBase accession

MIMAT0001185

Sequence

35- GUACAGUACUGUGAUAACUGAA -57

Get sequence

Proposed targets

TargetScanVert: gga-miR-101-3p
miRDB: MIMAT0001185

Variant

Gga-Mir-101-P1-v1

Seed

ACAGUAC

Precursor
(pre-Mir +30nt flank)

GGGCCACGAUGACUGACAGGCUGCCCUGGCUCAGUUAUCACAGUGCUGAUGCUGUCUCUUGUAAAGGUACAGUACUGUGAUAACUGAAGGAUGGCAGCCAUCUGAGCUUCAGAGGCCCU

Get precursor sequence

Structure

        10          20        30        40        50         
GGGCCACGAUGACUGACA--|      CUGGC                  A   UGUCUC 
                    GGCUGCC     UCAGUUAUCACAGUGCUG UGC      U
                    CCGACGG     AGUCAAUAGUGUCAUGAC AUG      U
UCCCGGAGACUUCGAGUCUA^      UAGGA                  -   GAAAUG 
       110       100        90        80        70         60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Ad	Ad	Ad	Br	Br	Ce	Ce	Ce	Ce	Gg	He	He	Hy	Hy	Ki	Ki	Li	Li	Lu	Lu	Ov	Pr	Pr	Sc	Sc	Sp	Sp	Te

Star sequence

Gga-Mir-101-P1-v1_5p*

mirBase accession

MIMAT0031077

Sequence

0- UCAGUUAUCACAGUGCUGAUGC -22

Get sequence

Proposed targets

TargetScanVert: gga-miR-101-2-5p
miRDB: MIMAT0031077

Mature sequence

Gga-Mir-101-P1-v1_3p

mirBase accession

MIMAT0001185

Sequence

37- UACAGUACUGUGAUAACUGAAG -59

Get sequence

Proposed targets

TargetScanVert: gga-miR-101-3p
miRDB: MIMAT0001185