| MirGeneDB ID | Efe-Mir-750-P1 |
|---|
| Family name |
MIR-750 (all species) |
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| Seed |
CAGAUCU |
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| Species |
Common brandling worm (Eisenia fetida) |
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| MiRBase ID |
|
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| Paralogues |
Efe-Mir-750-P2
Efe-Mir-750-P3
|
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| Orthologues |
Aae-Mir-750
Asu-Mir-750
Bge-Mir-750
Bpl-Mir-750
Cgi-Mir-750
Cte-Mir-750
Dma-Mir-750
Dpu-Mir-750
Esc-Mir-750
Hme-Mir-750
Isc-Mir-750
Lan-Mir-750
Lgi-Mir-750
Npo-Mir-750
Obi-Mir-750
Ovu-Mir-750
Sme-Mir-750
Tca-Mir-750
|
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| Node of Origin (locus) |
E. fetida
|
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| Node of Origin (family) |
Protostomia
|
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Genome context
(Efe_combined) |
Efet.01.20002: 2998-3060 [+]
|
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Precursor
(pre-Mir +30nt flank) |
GCGUCGUUGUAGAUCGUGCUUGGCCGCGUGAGCUGGUGGAAUAGAUCUCGGCAUGAGCAUUGAUUAACUGCCAGAUCUAACUCUUCCGGCUGGUUCGGUUCGGCAUCAGCAUCAACAAGACCU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GCGUCGUUGUAGAUCGU-- UG CG G U A-| C AUGAGCAU
GCU GCCG U AGCUGG GGA UAGAUCU GGC \
CGG UGGC G UCGGCC UCU AUCUAGA CCG U
UCCAGAACAACUACGACUA CU UU G U CA^ - UCAAUUAG
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Efe-Mir-750-P1_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AGCUGGUGGAAUAGAUCUCGGC -22
Get sequence
|
|---|
| Mature sequence |
Efe-Mir-750-P1_3p |
| mirBase accession | None |
|---|
| Sequence |
40- CCAGAUCUAACUCUUCCGGCUGG -63
Get sequence
|
|---|
