| MirGeneDB ID | Dre-Mir-725 |
|---|
| Family name |
MIR-725 (all species) |
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| Species |
Zebrafish (Danio rerio) |
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| MiRBase ID |
dre-mir-725
|
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| Paralogues |
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| Orthologues |
Cmi-Mir-725
Cpi-Mir-725
Gmo-Mir-725
Lch-Mir-725
Loc-Mir-725
Mal-Mir-725
Sto-Mir-725
Tni-Mir-725
Xla-Mir-725-P1
Xla-Mir-725-P2
Xtr-Mir-725
|
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| Node of Origin (locus) |
Gnathostomata
|
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| Node of Origin (family) |
Gnathostomata
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Genome context
(danRer11) |
chr22: 24366204-24366259 [-]
UCSC
Ensembl
|
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| Seed |
UCAGUCA |
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Precursor
(pre-Mir +30nt flank) |
UUACCUGGACGUAAGACCUGCAGUGCACAUUGCUAGGAAUGGUGGCUGAGAUGAAGAGCAGGAUUUCAGUCAUUGUUUCUAGUAGUGCGCGCUGCAGAUAUUCAGCUUUACUAAAC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UUACCUGGACGUAAGAC--| A UG GAAG
CUGCAGUGC CAUUGCUAGGAA GUGGCUGAGAU A
GACGUCGCG GUGAUGAUCUUU UACUGACUUUA G
CAAAUCAUUUCGACUUAUA^ C GU GGAC
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
| Br |
Br |
Em |
Ey |
Gu |
Gu |
He |
Li |
Li |
Ov |
Te |
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| Star sequence |
Dre-Mir-725_5p* |
| mirBase accession | MIMAT0032010 |
|---|
| Sequence |
0- UGCUAGGAAUGGUGGCUGAGAU -22
Get sequence
|
|---|
| Mature sequence |
Dre-Mir-725_3p |
| mirBase accession | MIMAT0003753 |
|---|
| Sequence |
34- UUCAGUCAUUGUUUCUAGUAGU -56
Get sequence
|
|---|
| Proposed targets |
TargetScanFish: dre-miR-725
|
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