MirGeneDB 3.0

MirGeneDB ID

Cmi-Mir-725

Family name MIR-725 (all species)
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues
Orthologues Cpi-Mir-725  Dre-Mir-725  Gmo-Mir-725  Lch-Mir-725  Loc-Mir-725  Mal-Mir-725  Sto-Mir-725  Tni-Mir-725  Xla-Mir-725-P1  Xla-Mir-725-P2  Xtr-Mir-725 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)
KI636870.1: 14835-14892 [-] UCSC Ensembl
Seed UCAGUCA
Precursor
(pre-Mir +30nt flank)
AUCACAGCCUUCAUGGUGGGUUGUUCACUGCACCUGAAACAGUGCCUGGGGAUAUUGUUGAGCAAUUUCAGUCAUUGUUUUGGGUGGAGUGCACCAAUCUUCACUCUACUGUAAUACA
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Structure
        10         20         30        40        50        
AUCACAGCCUUCAUGGU-      UU-|   G    UG        C   GG AUAUUG 
                  GGGUUG   CACU CACC  AAACAGUG CUG  G      U
                  UCUAAC   GUGA GUGG  UUUGUUAC GAC  U      U
ACAUAAUGUCAUCUCACU      CAC^   G    GU        U   UU AACGAG 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
Bl Br Ey Gi He In Ki Li Mu Ov Pa Re Sk Sp Te Ut
Star sequence

Cmi-Mir-725_5p*

mirBase accessionNone
Sequence
0- CACCUGAAACAGUGCCUGGGGA -22
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Mature sequence

Cmi-Mir-725_3p

mirBase accessionNone
Sequence
36- UUCAGUCAUUGUUUUGGGUGGA -58
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