Mir-582-v1

MirGeneDB ID

Cpo-Mir-582

Family name

MIR-582 (all species)

Species

Guinea pig (Cavia porcellus)

MiRBase ID

cpo-mir-582

Paralogues

Orthologues

Bta-Mir-582-v1 Cfa-Mir-582-v1 Cja-Mir-582 Dno-Mir-582-v1 Eca-Mir-582 Hsa-Mir-582-v1 Laf-Mir-582-v1 Mml-Mir-582-v1 Mmr-Mir-582-v1 Mmu-Mir-582-v1 Ocu-Mir-582 Pab-Mir-582-v1 Rno-Mir-582-v1

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(cavPor3)

scaffold_29: 2467345-2467404 [+] UCSC

Clustered miRNAs
(< 50kb from Mir-582-v1)

Mir-582-v1 scaffold_29: 2467345-2467404 [+] UCSC
Mir-582-v2 scaffold_29: 2467346-2467403 [+] UCSC

Variant

Cpo-Mir-582-v1

Seed

ACCGGUU

Precursor
(pre-Mir +30nt flank)

CACCUCAACACAGCAAUCUGUACUCUUUGGUUACAGUUGUUCAACCAGUUACUAAUUUAACUAAUUGUAACCGGUUGAACAACUGAACCCAAAGGGUGCAAAGUGAAAACAUUUCACUGA

Get precursor sequence

Structure

        10          20        30        40        50         
CACCUCAACACAGCAAUC--|           UUA             A     UAAUUU 
                    UGUACUCUUUGG   CAGUUGUUCAACC GUUAC      A
                    ACGUGGGAAACC   GUCAACAAGUUGG CAAUG      A
AGUCACUUUACAAAAGUGAA^           CAA             C     UUAAUC 
.       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Bl	Bl	Bl	Bl	Oo	Oo	Oo	Oo	To	Wh

Star sequence

Cpo-Mir-582-v1_5p*

mirBase accession

MIMAT0047351

Sequence

0- UUACAGUUGUUCAACCAGUUAC -22

Get sequence

Mature sequence

Cpo-Mir-582-v1_3p