Mir-433

MirGeneDB ID

Cja-Mir-433

Family name

MIR-433 (all species)

Species

White-tufted-ear marmoset (Callithrix jacchus)

MiRBase ID

Paralogues

Orthologues

Bta-Mir-433 Cfa-Mir-433 Cpo-Mir-433 Dno-Mir-433 Eca-Mir-433 Ete-Mir-433 Hsa-Mir-433 Laf-Mir-433 Mml-Mir-433 Mmr-Mir-433 Mmu-Mir-433 Ocu-Mir-433 Pab-Mir-433 Rno-Mir-433

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)

CM021924.1: 131689358-131689431 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-433)

Mir-770 CM021924.1: 131654447-131654508 [+] UCSC Ensembl
Mir-493 CM021924.1: 131672486-131672548 [+] UCSC Ensembl
Mir-337 CM021924.1: 131682138-131682197 [+] UCSC Ensembl
Mir-431 CM021924.1: 131688487-131688550 [+] UCSC Ensembl
Mir-433 CM021924.1: 131689358-131689431 [+] UCSC Ensembl
Mir-127 CM021924.1: 131690462-131690517 [+] UCSC Ensembl
Mir-432 CM021924.1: 131691960-131692028 [+] UCSC Ensembl
Mir-136 CM021924.1: 131692180-131692235 [+] UCSC Ensembl
Mir-370 CM021924.1: 131718304-131718360 [+] UCSC Ensembl

Seed

UCAUGAU

Precursor
(pre-Mir +30nt flank)

GAAGAAGAAGACCCAGUGGCCGGGGAGAAGUACGGUGAGCCUGUCAUUAUUCAGAGAGGCUAGAUCCUCUGUGUUGAGAAGGAUCAUGAUGGGCUCCUCGGUGUUCUCCAGGUAGCGGCACCACACCAUGAAGG

Get precursor sequence

Structure

        10           20        30        40        50        60      
GAAGAAGAAGACCCAGUG---|  GG      GUA   U           U    AGAGAGGCUAGAU 
                     GCC  GGAGAA   CGG GAGCCUGUCAU AUUC             C
                     UGG  CCUCUU   GCU CUCGGGUAGUA UAGG             C
GGAAGUACCACACCACGGCGA^  A-      GUG   C           C    AAGAGUUGUGUCU 
  130       120       110        100        90        80        70

Deep sequencing

3' NTU

Unknown

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

To

Star sequence

Cja-Mir-433_5p* (predicted)

mirBase accession

None

Sequence

0- UACGGUGAGCCUGUCAUUAUUC -22

Get sequence

Mature sequence

Cja-Mir-433_3p (predicted)

mirBase accession

None

Sequence

52- AUCAUGAUGGGCUCCUCGGUGU -74

Get sequence