Mir-133-P3-v2

MirGeneDB ID

Ami-Mir-133-P3

Family name

MIR-133 (all species)

Species

American alligator (Alligator mississippiensis)

MiRBase ID

ami-mir-133a-2

Paralogues

Ami-Mir-133-P1-v1 Ami-Mir-133-P2-v1 Ami-Mir-133-P3-v1 Ami-Mir-133-P4-v1

Orthologues

Aae-Mir-133 Aca-Mir-133-P3-v1 Aga-Mir-133 Asu-Mir-133 Bge-Mir-133 Bta-Mir-133-P3-v1 Cbr-Mir-133 Cel-Mir-133 Cfa-Mir-133-P3-v1 Cin-Mir-133 Cja-Mir-133-P3 Cli-Mir-133-P3-v1 Cmi-Mir-133-P3-v1 Cpi-Mir-133-P3-v1 Cpo-Mir-133-P3-v1 Cte-Mir-133 Dan-Mir-133 Dgr-Mir-133 Dlo-Mir-133 Dma-Mir-133 Dme-Mir-133 Dmo-Mir-133 Dno-Mir-133-P3-v1 Dpu-Mir-133 Dre-Mir-133-P3-v1 Dsi-Mir-133 Dya-Mir-133 Eba-Mir-133 Eca-Mir-133-P3-v1 Efe-Mir-133 Egr-Mir-133 Esc-Mir-133 Ete-Mir-133-P3-v1 Gga-Mir-133-P3-v1 Gja-Mir-133-P3-v1 Gmo-Mir-133-P3-v1 Gpa-Mir-133 Gsp-Mir-133 Hme-Mir-133 Hru-Mir-133 Hsa-Mir-133-P3-v1 Isc-Mir-133 Laf-Mir-133-P3-v1 Lan-Mir-133 Lch-Mir-133-P3 Lgi-Mir-133 Lhy-Mir-133 Llo-Mir-133 Loc-Mir-133-P3-v1 Mal-Mir-133-P3-v1 Mdo-Mir-133-P3-v1 Mgi-Mir-133 Mml-Mir-133-P3-v1 Mmr-Mir-133-P3-v1 Mmu-Mir-133-P3-v1 Mom-Mir-133 Mun-Mir-133-P3-v1 Neu-Mir-133-P3-v1 Oan-Mir-133-P3-v1 Obi-Mir-133 Ofu-Mir-133 Ovu-Mir-133 Pab-Mir-133-P3 Pau-Mir-133 Pbv-Mir-133-P3-v1 Pca-Mir-133 Pcr-Mir-133 Pdu-Mir-133 Pma-Mir-133-o3-v1 Pve-Mir-133 Rno-Mir-133-P3-v1 Rph-Mir-133 Sha-Mir-133-P3-v1 Sma-Mir-133 Snu-Mir-133 Spt-Mir-133-P3 Spu-Mir-133 Sto-Mir-133-P3-v1 Tca-Mir-133 Tgu-Mir-133-P3-v1 Tur-Mir-133 War-Mir-133 Xbo-Mir-133 Xla-Mir-133-P3a-v1 Xla-Mir-133-P3b-v1 Xtr-Mir-133-P3-v1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)

NW_017708899.1: 1695335-1695394 [-] UCSC

Clustered miRNAs
(< 50kb from Mir-133-P3-v2)

Mir-133-P3-v1 NW_017708899.1: 1695335-1695394 [-] UCSC
Mir-133-P3-v2 NW_017708899.1: 1695335-1695394 [-] UCSC
Mir-1-P3 NW_017708899.1: 1710026-1710086 [-] UCSC

Variant

Ami-Mir-133-P3-v2

Seed

UGGUCCC

Precursor
(pre-Mir +30nt flank)

CAUGACCUGUGAGGCCAAAUGCUUUGCUAAAGCUGGUAAAAUGGAACCAAAUCAACUGUUCAAUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUGUGCAUUGAUCACUCAGACGCAGCUU

Get precursor sequence

Structure

        10          20        30        40        50         
CAUGACCUGUGAGGCCA--|    UUU    A       AA  U  A       CAACUG 
                   AAUGC   GCUA AGCUGGU  AA GG ACCAAAU      U
                   UUACG   CGAU UCGACCA  UU CC UGGUUUA      U
UUCGACGCAGACUCACUAG^    UGU    G       AC  C  C       GGUAAC 
.       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

To

Star sequence

Ami-Mir-133-P3-v2_5p*

mirBase accession

MIMAT0038146

Sequence

0- AGCUGGUAAAAUGGAACCAAAU -22

Get sequence

Mature sequence

Ami-Mir-133-P3-v2_3p