MirGeneDB 3.0
48 Branchiostoma lanceolatum microRNA genes of family MIR-4872 (all species)
Sort by genome coordinates Motifs Tissue expression
- +
MirGeneDB ID ▲ MiRBase ID Family Seed 5p accession 3p accession Chromosome Start End Strand Node of origin (locus) Node of origin (family) Iso­miR 3' NTU  UG  UGUG CNNC Ad Ad Em Em Em Em
Bla-Mir-4872-P1 None MIR-4872 UACGGGG None None Sc0000763 536 594 + B. lanceolatum Branchiostoma No 1
Bla-Mir-4872-P2 None MIR-4872 UACGGGG None None Sc0000763 814 872 + B. lanceolatum Branchiostoma Unknown 1
Bla-Mir-4872-P3 None MIR-4872 GCCGGGG None None Sc0000763 3248 3306 + B. lanceolatum Branchiostoma Unknown 1
Bla-Mir-4872-P4 None MIR-4872 GCUGAGG None None Sc0000763 3382 3441 + B. lanceolatum Branchiostoma No 1
Bla-Mir-4872-P5 None MIR-4872 UACGGGG None None Sc0000763 3908 3966 + B. lanceolatum Branchiostoma Unknown 1
Bla-Mir-4872-P6a None MIR-4872 UACGGGG None None Sc0000763 4209 4267 + B. lanceolatum Branchiostoma Unknown 1 1
Bla-Mir-4872-P6b None MIR-4872 UACGGGG None None Sc0000763 9162 9220 + B. lanceolatum Branchiostoma Unknown 1 1
Bla-Mir-4872-P6c None MIR-4872 UACGGGG None None Sc0000044 1564104 1564162 - B. lanceolatum Branchiostoma Unknown 1 1
Bla-Mir-4872-P7a None MIR-4872 UGCCGGG None None Sc0000763 4448 4504 + B. lanceolatum Branchiostoma Unknown 1
Bla-Mir-4872-P7b None MIR-4872 UGCCGGG None None Sc0000763 9401 9457 + B. lanceolatum Branchiostoma Unknown 1
Bla-Mir-4872-P8 None MIR-4872 UGCGGGG None None Sc0000763 4854 4911 + B. lanceolatum Branchiostoma Unknown 1
Bla-Mir-4872-P9a None MIR-4872 UGCGGGG None None Sc0000763 10207 10263 + B. lanceolatum Branchiostoma Unknown 1
Bla-Mir-4872-P9b None MIR-4872 UGCGGGG None None Sc0000763 5661 5717 + B. lanceolatum Branchiostoma Unknown 1
Bla-Mir-4872-P9c None MIR-4872 UGCGGGG None None None None None None B. lanceolatum Branchiostoma Unknown
Bla-Mir-4872-P10a None MIR-4872 UGCGGGG None None Sc0000763 6063 6119 + B. lanceolatum Branchiostoma No 1 1 1
Bla-Mir-4872-P10b None MIR-4872 UGCGGGG None None Sc0000763 10414 10470 + B. lanceolatum Branchiostoma No 1 1 1
Bla-Mir-4872-P11a None MIR-4872 UGCGGGG None None Sc0000763 10892 10951 + B. lanceolatum Branchiostoma Unknown 1
Bla-Mir-4872-P11b None MIR-4872 UGCGGGG None None Sc0000763 6541 6600 + B. lanceolatum Branchiostoma Unknown 1
Bla-Mir-4872-P12 None MIR-4872 UGCGGGG None None Sc0000763 11249 11305 + B. lanceolatum Branchiostoma No 1
Bla-Mir-4872-P13 None MIR-4872 UGCGGGG None None Sc0000763 11455 11511 + B. lanceolatum Branchiostoma Unknown 1
Bla-Mir-4872-P14a None MIR-4872 UACGGGG None None Sc0000763 11768 11826 + B. lanceolatum Branchiostoma No
Bla-Mir-4872-P14b None MIR-4872 UACGGGG None None Sc0000044 1561476 1561534 - B. lanceolatum Branchiostoma No
Bla-Mir-4872-P15 None MIR-4872 GCCGGGG None None Sc0000763 13652 13710 + B. lanceolatum Branchiostoma No
Bla-Mir-4872-P16 None MIR-4872 GCCGGGG None None Sc0000763 13823 13881 + B. lanceolatum Branchiostoma Unknown 1
Bla-Mir-4872-P17 None MIR-4872 GCCGGGG None None Sc0000763 13997 14055 + B. lanceolatum Branchiostoma Unknown 1 1
Bla-Mir-4872-P18 None MIR-4872 GCCGGGG None None Sc0000763 14787 14845 + B. lanceolatum Branchiostoma Unknown 1 1
Bla-Mir-4872-P19 None MIR-4872 GCUGGGG None None Sc0000044 1588092 1588152 - B. lanceolatum Branchiostoma Unknown 1
Bla-Mir-4872-P20 None MIR-4872 GCUGAGG None None Sc0000044 1587403 1587463 - B. lanceolatum Branchiostoma No
Bla-Mir-4872-P21 None MIR-4872 UACGGGG None None Sc0000044 1586185 1586243 - B. lanceolatum Branchiostoma Unknown 1
Bla-Mir-4872-P22a None MIR-4872 UACGGGG None None Sc0000044 1585913 1585971 - B. lanceolatum Branchiostoma Unknown
Bla-Mir-4872-P22b None MIR-4872 UACGGGG None None Sc0000044 1583822 1583880 - B. lanceolatum Branchiostoma Unknown
Bla-Mir-4872-P22c None MIR-4872 UACGGGG None None Sc0000044 1583521 1583579 - B. lanceolatum Branchiostoma Unknown 1
Bla-Mir-4872-P23 None MIR-4872 UACGGGG None None Sc0000044 1585615 1585673 - B. lanceolatum Branchiostoma Unknown
Bla-Mir-4872-P24 None MIR-4872 UACGGGG None None Sc0000044 1585024 1585082 - B. lanceolatum Branchiostoma Unknown
Bla-Mir-4872-P25a None MIR-4872 UACGGGG None None Sc0000044 1582296 1582354 - B. lanceolatum Branchiostoma Unknown
Bla-Mir-4872-P25b None MIR-4872 UACGGGG None None Sc0000044 1578704 1578762 - B. lanceolatum Branchiostoma Unknown
Bla-Mir-4872-P25c None MIR-4872 UACGGGG None None Sc0000044 1571338 1571396 - B. lanceolatum Branchiostoma Unknown
Bla-Mir-4872-P26a None MIR-4872 UGCGGGG None None Sc0000044 1579208 1579264 - B. lanceolatum Branchiostoma Unknown 1
Bla-Mir-4872-P26b None MIR-4872 UGCGGGG None None Sc0000044 1571716 1571772 - B. lanceolatum Branchiostoma Unknown
Bla-Mir-4872-P26c None MIR-4872 UGCGGGG None None Sc0000044 1575184 1575240 - B. lanceolatum Branchiostoma Unknown 1
Bla-Mir-4872-P27 None MIR-4872 UACGGGG None None Sc0000044 1574777 1574835 - B. lanceolatum Branchiostoma Unknown
Bla-Mir-4872-P28 None MIR-4872 UGCGGGG None None Sc0000044 1566732 1566788 - B. lanceolatum Branchiostoma Unknown 1
Bla-Mir-4872-P29 None MIR-4872 UGCGGGG None None Sc0000044 1563350 1563406 - B. lanceolatum Branchiostoma Unknown 1
Bla-Mir-4872-P30a None MIR-4872 UGCGGGG None None Sc0000044 1563150 1563206 - B. lanceolatum Branchiostoma Unknown 1
Bla-Mir-4872-P30b None MIR-4872 UGCGGGG None None Sc0000044 1562950 1563006 - B. lanceolatum Branchiostoma Unknown 1
Bla-Mir-4872-P30c None MIR-4872 UGCGGGG None None Sc0000044 1562344 1562400 - B. lanceolatum Branchiostoma Unknown 1
Bla-Mir-4872-P31a None MIR-4872 UGCGGGG None None Sc0000044 1562750 1562806 - B. lanceolatum Branchiostoma Unknown 1
Bla-Mir-4872-P31b None MIR-4872 UGCGGGG None None Sc0000044 1561992 1562048 - B. lanceolatum Branchiostoma Unknown 1

(red - mature/co-mature, blue - star)

Download sequences for: precursor | 5p | 3p | mature | star | mature/star | loop | extend_pre | all

Download genome coordinates (GFF format)

Download count matrix