Mir-4872-P20

MirGeneDB ID

Bla-Mir-4872-P20

Family name

MIR-4872 (all species)

Seed

GCUGAGG

Species

European lancelet (Branchiostoma lanceolatum)

MiRBase ID

Paralogues

Bla-Mir-4872-P1 Bla-Mir-4872-P2 Bla-Mir-4872-P3 Bla-Mir-4872-P4 Bla-Mir-4872-P5 Bla-Mir-4872-P6a Bla-Mir-4872-P6b Bla-Mir-4872-P6c Bla-Mir-4872-P7a Bla-Mir-4872-P7b Bla-Mir-4872-P8 Bla-Mir-4872-P9a Bla-Mir-4872-P9b Bla-Mir-4872-P9c Bla-Mir-4872-P10a Bla-Mir-4872-P10b Bla-Mir-4872-P11a Bla-Mir-4872-P11b Bla-Mir-4872-P12 Bla-Mir-4872-P13 Bla-Mir-4872-P14a Bla-Mir-4872-P14b Bla-Mir-4872-P15 Bla-Mir-4872-P16 Bla-Mir-4872-P17 Bla-Mir-4872-P18 Bla-Mir-4872-P19 Bla-Mir-4872-P21 Bla-Mir-4872-P22a Bla-Mir-4872-P22b Bla-Mir-4872-P22c Bla-Mir-4872-P23 Bla-Mir-4872-P24 Bla-Mir-4872-P25a Bla-Mir-4872-P25b Bla-Mir-4872-P25c Bla-Mir-4872-P26a Bla-Mir-4872-P26b Bla-Mir-4872-P26c Bla-Mir-4872-P27 Bla-Mir-4872-P28 Bla-Mir-4872-P29 Bla-Mir-4872-P30a Bla-Mir-4872-P30b Bla-Mir-4872-P30c Bla-Mir-4872-P31a Bla-Mir-4872-P31b

Orthologues

Node of Origin (locus)

B. lanceolatum

Node of Origin (family)

Branchiostoma

Genome context
(BraLan2)

Sc0000044: 1587403-1587463 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

CAACAUGUCUUAUCGUCGGUCACUAUAGUGUGCUGAGGGAAUCGAGUUUAUGUGUUCAGUUUUUCCAACAUAGACUCGUUUCCUCAGCUCCCUAUGGGAGACUAAUUUCCAGCGUCUUUUA

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Structure

        10         20         30        40        50        60
CAACAUGUCUUAUCGUC-    A-|     UGU          U           GUUCAG 
                  GGUC  CUAUAG   GCUGAGGGAA CGAGUUUAUGU      U
                  UCAG  GGUAUC   CGACUCCUUU GCUCAGAUACA      U
AUUUUCUGCGACCUUUAA    AG^     CCU          -           ACCUUU 
 .       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Ad	Ad	Em	Em	Em	Em

Mature sequence

Bla-Mir-4872-P20_5p

mirBase accession

None

Sequence

0- UGCUGAGGGAAUCGAGUUUAUGU -23

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Star sequence

Bla-Mir-4872-P20_3p*

mirBase accession

None

Sequence

39- AUAGACUCGUUUCCUCAGCUCC -61

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