MirGeneDB 3.0

MirGeneDB ID

Bla-Mir-4872-P13

Family name MIR-4872 (all species)
Species European lancelet (Branchiostoma lanceolatum)
MiRBase ID
Paralogues Bla-Mir-4872-P1  Bla-Mir-4872-P2  Bla-Mir-4872-P3  Bla-Mir-4872-P4  Bla-Mir-4872-P5  Bla-Mir-4872-P6a  Bla-Mir-4872-P6b  Bla-Mir-4872-P6c  Bla-Mir-4872-P7a  Bla-Mir-4872-P7b  Bla-Mir-4872-P8  Bla-Mir-4872-P9a  Bla-Mir-4872-P9b  Bla-Mir-4872-P9c  Bla-Mir-4872-P10a  Bla-Mir-4872-P10b  Bla-Mir-4872-P11a  Bla-Mir-4872-P11b  Bla-Mir-4872-P12  Bla-Mir-4872-P14a  Bla-Mir-4872-P14b  Bla-Mir-4872-P15  Bla-Mir-4872-P16  Bla-Mir-4872-P17  Bla-Mir-4872-P18  Bla-Mir-4872-P19  Bla-Mir-4872-P20  Bla-Mir-4872-P21  Bla-Mir-4872-P22a  Bla-Mir-4872-P22b  Bla-Mir-4872-P22c  Bla-Mir-4872-P23  Bla-Mir-4872-P24  Bla-Mir-4872-P25a  Bla-Mir-4872-P25b  Bla-Mir-4872-P25c  Bla-Mir-4872-P26a  Bla-Mir-4872-P26b  Bla-Mir-4872-P26c  Bla-Mir-4872-P27  Bla-Mir-4872-P28  Bla-Mir-4872-P29  Bla-Mir-4872-P30a  Bla-Mir-4872-P30b  Bla-Mir-4872-P30c  Bla-Mir-4872-P31a  Bla-Mir-4872-P31b 
Orthologues
Node of Origin (locus) B. lanceolatum
Node of Origin (family) Branchiostoma
Genome context
(BraLan2)
Sc0000763: 11455-11511 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-4872-P13)
Mir-4872-P1 Sc0000763: 536-594 [+] Ensembl
Mir-4872-P2 Sc0000763: 814-872 [+] Ensembl
Mir-4872-P3 Sc0000763: 3248-3306 [+] Ensembl
Mir-4872-P4 Sc0000763: 3382-3441 [+] Ensembl
Mir-4872-P5 Sc0000763: 3908-3966 [+] Ensembl
Mir-4872-P6a Sc0000763: 4209-4267 [+] Ensembl
Mir-4872-P7a Sc0000763: 4448-4504 [+] Ensembl
Mir-4872-P8 Sc0000763: 4854-4911 [+] Ensembl
Mir-4872-P9b Sc0000763: 5661-5717 [+] Ensembl
Mir-4872-P10a Sc0000763: 6063-6119 [+] Ensembl
Mir-4872-P11b Sc0000763: 6541-6600 [+] Ensembl
Mir-4872-P6b Sc0000763: 9162-9220 [+] Ensembl
Mir-4872-P7b Sc0000763: 9401-9457 [+] Ensembl
Mir-4872-P9a Sc0000763: 10207-10263 [+] Ensembl
Mir-4872-P10b Sc0000763: 10414-10470 [+] Ensembl
Mir-4872-P11a Sc0000763: 10892-10951 [+] Ensembl
Mir-4872-P12 Sc0000763: 11249-11305 [+] Ensembl
Mir-4872-P13 Sc0000763: 11455-11511 [+] Ensembl
Mir-4872-P14a Sc0000763: 11768-11826 [+] Ensembl
Mir-4872-P15 Sc0000763: 13652-13710 [+] Ensembl
Mir-4872-P16 Sc0000763: 13823-13881 [+] Ensembl
Mir-4872-P17 Sc0000763: 13997-14055 [+] Ensembl
Mir-4872-P18 Sc0000763: 14787-14845 [+] Ensembl
Seed UGCGGGG
Precursor
(pre-Mir +30nt flank)
CCUCUCACAUCGUUCCGGGUCUUACUGGGUUUGCGGGGGGUUCACAUCAUGUGUUGUACUGCUACAUGGUGGGACUCCCCUGCAACCUCAUAGGACCCGUCAGCAACCAUGUCUGGA
Get precursor sequence
Structure
        10           20        30         40        50        
CCUCUCACAUCGUUCCG---|      C    U         -    A        GUUGU 
                    GGUCUUA UGGG UUGCGGGGG GUUC CAUCAUGU     \
                    CCAGGAU ACUC AACGUCCCC CAGG GUGGUACA     A
AGGUCUGUACCAACGACUGC^      -    C         U    -        UCGUC 
     110       100         90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ad Ad Em Em Em Em
Mature sequence

Bla-Mir-4872-P13_5p

mirBase accessionNone
Sequence
0- UUGCGGGGGGUUCACAUCAUGU -22
Get sequence
Star sequence

Bla-Mir-4872-P13_3p*

mirBase accessionNone
Sequence
35- AUGGUGGGACUCCCCUGCAACC -57
Get sequence