Mir-4872-P17

MirGeneDB ID

Bla-Mir-4872-P17

Family name

Species

European lancelet (Branchiostoma lanceolatum)

MiRBase ID

Paralogues

Bla-Mir-4872-P1 Bla-Mir-4872-P2 Bla-Mir-4872-P3 Bla-Mir-4872-P4 Bla-Mir-4872-P5 Bla-Mir-4872-P6a Bla-Mir-4872-P6b Bla-Mir-4872-P6c Bla-Mir-4872-P7a Bla-Mir-4872-P7b Bla-Mir-4872-P8 Bla-Mir-4872-P9a Bla-Mir-4872-P9b Bla-Mir-4872-P9c Bla-Mir-4872-P10a Bla-Mir-4872-P10b Bla-Mir-4872-P11a Bla-Mir-4872-P11b Bla-Mir-4872-P12 Bla-Mir-4872-P13 Bla-Mir-4872-P14a Bla-Mir-4872-P14b Bla-Mir-4872-P15 Bla-Mir-4872-P16 Bla-Mir-4872-P18 Bla-Mir-4872-P19 Bla-Mir-4872-P20 Bla-Mir-4872-P21 Bla-Mir-4872-P22a Bla-Mir-4872-P22b Bla-Mir-4872-P22c Bla-Mir-4872-P23 Bla-Mir-4872-P24 Bla-Mir-4872-P25a Bla-Mir-4872-P25b Bla-Mir-4872-P25c Bla-Mir-4872-P26a Bla-Mir-4872-P26b Bla-Mir-4872-P26c Bla-Mir-4872-P27 Bla-Mir-4872-P28 Bla-Mir-4872-P29 Bla-Mir-4872-P30a Bla-Mir-4872-P30b Bla-Mir-4872-P30c Bla-Mir-4872-P31a Bla-Mir-4872-P31b

Orthologues

Node of Origin (locus)

B. lanceolatum

Node of Origin (family)

Branchiostoma

Genome context
(BraLan2)

Sc0000763: 13997-14055 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-4872-P17)

Mir-4872-P1 Sc0000763: 536-594 [+] Ensembl
Mir-4872-P2 Sc0000763: 814-872 [+] Ensembl
Mir-4872-P3 Sc0000763: 3248-3306 [+] Ensembl
Mir-4872-P4 Sc0000763: 3382-3441 [+] Ensembl
Mir-4872-P5 Sc0000763: 3908-3966 [+] Ensembl
Mir-4872-P6a Sc0000763: 4209-4267 [+] Ensembl
Mir-4872-P7a Sc0000763: 4448-4504 [+] Ensembl
Mir-4872-P8 Sc0000763: 4854-4911 [+] Ensembl
Mir-4872-P9b Sc0000763: 5661-5717 [+] Ensembl
Mir-4872-P10a Sc0000763: 6063-6119 [+] Ensembl
Mir-4872-P11b Sc0000763: 6541-6600 [+] Ensembl
Mir-4872-P6b Sc0000763: 9162-9220 [+] Ensembl
Mir-4872-P7b Sc0000763: 9401-9457 [+] Ensembl
Mir-4872-P9a Sc0000763: 10207-10263 [+] Ensembl
Mir-4872-P10b Sc0000763: 10414-10470 [+] Ensembl
Mir-4872-P11a Sc0000763: 10892-10951 [+] Ensembl
Mir-4872-P12 Sc0000763: 11249-11305 [+] Ensembl
Mir-4872-P13 Sc0000763: 11455-11511 [+] Ensembl
Mir-4872-P14a Sc0000763: 11768-11826 [+] Ensembl
Mir-4872-P15 Sc0000763: 13652-13710 [+] Ensembl
Mir-4872-P16 Sc0000763: 13823-13881 [+] Ensembl
Mir-4872-P17 Sc0000763: 13997-14055 [+] Ensembl
Mir-4872-P18 Sc0000763: 14787-14845 [+] Ensembl

Seed

GCCGGGG

Precursor
(pre-Mir +30nt flank)

UUUUCAUUGUUUCUCUUGGUUCACAUGCGGUGCCGGGGCAAUAAAAGCUCUGAGUUUUGUUAGCUCCAGAGUUUUGUUGCCCUGGCUCUCCAUGUGACCACGUGCCUGCAGGUAUAGGA

Get precursor sequence

Structure

        10           20        30        40        50         
UUUUCAUUGUUUCUCUU---|  U      C  U               G     AGUUUU 
                    GGU CACAUG GG GCCGGGGCAAUAAAA CUCUG      G
                    CCA GUGUAC UC CGGUCCCGUUGUUUU GAGAC      U
AGGAUAUGGACGUCCGUGCA^  -      C  U               -     CUCGAU 
       110       100         90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Ad	Ad	Em	Em	Em	Em

Mature sequence

Bla-Mir-4872-P17_5p

mirBase accession

None

Sequence

0- UGCCGGGGCAAUAAAAGCUCUGA -23

Get sequence

Star sequence

Bla-Mir-4872-P17_3p* (predicted)

mirBase accession

None

Sequence

37- AGAGUUUUGUUGCCCUGGCUCU -59

Get sequence