Mir-4872-P28

MirGeneDB ID

Bla-Mir-4872-P28

Family name

Species

European lancelet (Branchiostoma lanceolatum)

MiRBase ID

Paralogues

Bla-Mir-4872-P1 Bla-Mir-4872-P2 Bla-Mir-4872-P3 Bla-Mir-4872-P4 Bla-Mir-4872-P5 Bla-Mir-4872-P6a Bla-Mir-4872-P6b Bla-Mir-4872-P6c Bla-Mir-4872-P7a Bla-Mir-4872-P7b Bla-Mir-4872-P8 Bla-Mir-4872-P9a Bla-Mir-4872-P9b Bla-Mir-4872-P9c Bla-Mir-4872-P10a Bla-Mir-4872-P10b Bla-Mir-4872-P11a Bla-Mir-4872-P11b Bla-Mir-4872-P12 Bla-Mir-4872-P13 Bla-Mir-4872-P14a Bla-Mir-4872-P14b Bla-Mir-4872-P15 Bla-Mir-4872-P16 Bla-Mir-4872-P17 Bla-Mir-4872-P18 Bla-Mir-4872-P19 Bla-Mir-4872-P20 Bla-Mir-4872-P21 Bla-Mir-4872-P22a Bla-Mir-4872-P22b Bla-Mir-4872-P22c Bla-Mir-4872-P23 Bla-Mir-4872-P24 Bla-Mir-4872-P25a Bla-Mir-4872-P25b Bla-Mir-4872-P25c Bla-Mir-4872-P26a Bla-Mir-4872-P26b Bla-Mir-4872-P26c Bla-Mir-4872-P27 Bla-Mir-4872-P29 Bla-Mir-4872-P30a Bla-Mir-4872-P30b Bla-Mir-4872-P30c Bla-Mir-4872-P31a Bla-Mir-4872-P31b

Orthologues

Node of Origin (locus)

B. lanceolatum

Node of Origin (family)

Branchiostoma

Genome context
(BraLan2)

Sc0000044: 1566732-1566788 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-4872-P28)

Mir-4872-P14b Sc0000044: 1561476-1561534 [-] Ensembl
Mir-4872-P31b Sc0000044: 1561992-1562048 [-] Ensembl
Mir-4872-P30c Sc0000044: 1562344-1562400 [-] Ensembl
Mir-4872-P31a Sc0000044: 1562750-1562806 [-] Ensembl
Mir-4872-P30b Sc0000044: 1562950-1563006 [-] Ensembl
Mir-4872-P30a Sc0000044: 1563150-1563206 [-] Ensembl
Mir-4872-P29 Sc0000044: 1563350-1563406 [-] Ensembl
Mir-4872-P6c Sc0000044: 1564104-1564162 [-] Ensembl
Mir-4872-P28 Sc0000044: 1566732-1566788 [-] Ensembl
Mir-4872-P25c Sc0000044: 1571338-1571396 [-] Ensembl
Mir-4872-P26b Sc0000044: 1571716-1571772 [-] Ensembl
Mir-4872-P27 Sc0000044: 1574777-1574835 [-] Ensembl
Mir-4872-P26c Sc0000044: 1575184-1575240 [-] Ensembl
Mir-4872-P25b Sc0000044: 1578704-1578762 [-] Ensembl
Mir-4872-P26a Sc0000044: 1579208-1579264 [-] Ensembl
Mir-4872-P25a Sc0000044: 1582296-1582354 [-] Ensembl
Mir-4872-P22c Sc0000044: 1583521-1583579 [-] Ensembl
Mir-4872-P22b Sc0000044: 1583822-1583880 [-] Ensembl
Mir-4872-P24 Sc0000044: 1585024-1585082 [-] Ensembl
Mir-4872-P23 Sc0000044: 1585615-1585673 [-] Ensembl
Mir-4872-P22a Sc0000044: 1585913-1585971 [-] Ensembl
Mir-4872-P21 Sc0000044: 1586185-1586243 [-] Ensembl
Mir-4872-P20 Sc0000044: 1587403-1587463 [-] Ensembl
Mir-4872-P19 Sc0000044: 1588092-1588152 [-] Ensembl

Seed

UGCGGGG

Precursor
(pre-Mir +30nt flank)

UUACUCCUCUGUUUCCGGGUCUUACUGGGUUUGCGGGGGGCUCACAUCAUGUGUUCUACUGCUACAUGGUGCGACUCCCCCGUAACCUCAUAGGACCCGUCAGCAACAAUGCGGAGA

Get precursor sequence

Structure

        10           20        30        40        50        
UUACUCCUCUGUUUCCG---|      C    U         GC  A        GUUCU 
                    GGUCUUA UGGG UUGCGGGGG  UC CAUCAUGU     \
                    CCAGGAU ACUC AAUGCCCCC  AG GUGGUACA     A
AGAGGCGUAACAACGACUGC^      -    C         UC  C        UCGUC 
     110       100         90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Ad	Em	Em	Em	Em

Mature sequence

Bla-Mir-4872-P28_5p

mirBase accession

None

Sequence

0- UUGCGGGGGGCUCACAUCAUGU -22

Get sequence

Star sequence

Bla-Mir-4872-P28_3p* (predicted)

mirBase accession

None

Sequence

35- AUGGUGCGACUCCCCCGUAACC -57

Get sequence