MirGeneDB 3.0
MirGeneDB ID

Tni-Mir-728-P2

Family name MIR-728 (all species)
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID
Paralogues Tni-Mir-728-P1 
Orthologues Gmo-Mir-728-P2  Loc-Mir-728  Mal-Mir-728-P2 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Neopterygii
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)		 15: 2762818-2762877 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-728-P2)		 Mir-728-P2 15: 2762818-2762877 [-] UCSC Ensembl
Mir-727-P2-v1 15: 2764145-2764210 [-] UCSC Ensembl
Mir-727-P2-v2 15: 2764146-2764208 [-] UCSC Ensembl
Seed AUACUAA
Precursor
(pre-Mir +30nt flank)		 
GUGCUUCAUCGGAUUCUGGCCCCCCUGAGGAAAUGUAGUAGACUAUAAGUAUACGUGGGUCAGACUGUAUACUAAGUAUACUACGUUUACUCAAGAGCGGCGCCUCGUUUCUGCCGCCGG
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Structure
        10         20         30        40        50        60
GUGCUUCAUCGGAUUCUG-   CCCC-|   G          G   AUA        UGGG 
                   GCC     UGAG AAAUGUAGUA ACU   AGUAUACG    U
                   CGG     ACUC UUUGCAUCAU UGA   UCAUAUGU    C
GGCCGCCGUCUUUGCUCCG   CGAGA^   A          A   A--        CAGA 
.       110       100        90        80          70
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14)
Tissue expression
- +
Sp Sp Sp To
Star sequence

Tni-Mir-728-P2_5p*
mirBase accessionNone
Sequence 
0- AAAUGUAGUAGACUAUAAGUAUACG -25
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Mature sequence

Tni-Mir-728-P2_3p (predicted)
mirBase accessionNone
Sequence 
37- UAUACUAAGUAUACUACGUUUAC -60
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