MirGeneDB 3.0

MirGeneDB ID

Loc-Mir-728

Family name MIR-728 (all species)
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues
Orthologues Dre-Mir-728-P1  Gmo-Mir-728-P1  Gmo-Mir-728-P2  Mal-Mir-728-P2  Tni-Mir-728-P1  Tni-Mir-728-P2 
Node of Origin (locus) Neopterygii
Node of Origin (family) Neopterygii
Genome context
(LepOcu1)
LG14: 13267886-13267947 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-728)
Mir-727-P4-v1 LG14: 13263402-13263467 [+] Ensembl
Mir-727-P4-v2 LG14: 13263404-13263465 [+] Ensembl
Mir-728 LG14: 13267886-13267947 [+] Ensembl
Seed UACUAAG
Precursor
(pre-Mir +30nt flank)
UUAUCACUGUAACUUUGGCAUUCCUUAGAAAAAUGUAGUAUACUAUAAGUGUACCUUCCACAUCAACAGUAUACUAAGUACACUACGUUUUCUUGAGGAAAACUGCAUCAACCCAAGCCGAG
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Structure
        10        20          30        40        50        60 
UUAUCACUGUAACUUUGGCA--|      GA          A    AUA       CUUCCA 
                      UUCCUUA  AAAAUGUAGU UACU   AGUGUAC      C
                      AAGGAGU  UUUUGCAUCA AUGA   UCAUAUG      A
GAGCCGAACCCAACUACGUCAA^      UC          C    A--       ACAACU 
120       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Star sequence

Loc-Mir-728_5p*

mirBase accessionNone
Sequence
0- AAAUGUAGUAUACUAUAAGUGUAC -24
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Mature sequence

Loc-Mir-728_3p

mirBase accessionNone
Sequence
40- AUACUAAGUACACUACGUUUUC -62
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