MirGeneDB ID | Loc-Mir-728 |
Family name |
MIR-728 (all species) |
Seed |
UACUAAG |
Species |
Spotted gar (Lepisosteus oculatus) |
MiRBase ID |
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Paralogues |
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Orthologues |
Dre-Mir-728-P1
Gmo-Mir-728-P1
Gmo-Mir-728-P2
Mal-Mir-728-P2
Tni-Mir-728-P1
Tni-Mir-728-P2
|
Node of Origin (locus) |
Neopterygii
|
Node of Origin (family) |
Neopterygii
|
Genome context (LepOcu1) |
LG14: 13267886-13267947 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UUAUCACUGUAACUUUGGCAUUCCUUAGAAAAAUGUAGUAUACUAUAAGUGUACCUUCCACAUCAACAGUAUACUAAGUACACUACGUUUUCUUGAGGAAAACUGCAUCAACCCAAGCCGAG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UUAUCACUGUAACUUUGGCA--| GA A AUA CUUCCA
UUCCUUA AAAAUGUAGU UACU AGUGUAC C
AAGGAGU UUUUGCAUCA AUGA UCAUAUG A
GAGCCGAACCCAACUACGUCAA^ UC C A-- ACAACU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
Br |
Br |
He |
He |
He |
He |
Ov |
Ov |
Ov |
Ov |
Te |
Te |
Te |
Te |
To |
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Star sequence |
Loc-Mir-728_5p* |
mirBase accession | None |
Sequence |
0- AAAUGUAGUAUACUAUAAGUGUAC -24
Get sequence
|
Mature sequence |
Loc-Mir-728_3p |
mirBase accession | None |
Sequence |
40- AUACUAAGUACACUACGUUUUC -62
Get sequence
|