| MirGeneDB ID | Gmo-Mir-728-P1 |
|---|
| Family name |
MIR-728 (all species) |
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| Species |
Cod (Gadus morhua) |
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| MiRBase ID |
gmo-mir-728a
|
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| Paralogues |
Gmo-Mir-728-P2
|
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| Orthologues |
Dre-Mir-728-P1
Loc-Mir-728
Tni-Mir-728-P1
|
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| Node of Origin (locus) |
Clupeocephala
|
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| Node of Origin (family) |
Neopterygii
|
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Genome context
(Gadus_morhua.gadMor1.dna.toplevel) |
GeneScaffold_1176: 123530-123589 [-]
UCSC
Ensembl
|
|---|
| Seed |
UACUAAG |
|---|
Precursor
(pre-Mir +30nt flank) |
GGCUGGUUUUGUCCCGUGGCACUCUGGGAAAAUGUAGUAGUACUAUAAGUAUACGUGGACAAUGGAAGUAUACUAAGUACACUACGUUUAUCCAGAGGUGCUUGCUGUCUGCUGGCUUGA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GGCUGGUUUUGUCCCGU- -| A A AUA GUGGAC
GGCA CUCUGGG AAAUGUAGU GUACU AGUAUAC \
UCGU GAGACCU UUUGCAUCA CAUGA UCAUAUG A
AGUUCGGUCGUCUGUCGU G^ A - A-- AAGGUA
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), UGUG in loop |
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Tissue expression
|
|
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| Star sequence |
Gmo-Mir-728-P1_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AAUGUAGUAGUACUAUAAGUAUAC -24
Get sequence
|
|---|
| Mature sequence |
Gmo-Mir-728-P1_3p |
| mirBase accession | MIMAT0044109 |
|---|
| Sequence |
39- AUACUAAGUACACUACGUUUA -60
Get sequence
|
|---|
