MirGeneDB 3.0

MirGeneDB ID

Tni-Mir-727-P2

Family name MIR-727 (all species)
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID
Paralogues Tni-Mir-727-P1-v1  Tni-Mir-727-P2-v1 
Orthologues Gmo-Mir-727-P2  Mal-Mir-727-P2-v1  Spt-Mir-727 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Osteichthyes
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)
15: 2764146-2764208 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-727-P2-v2)
Mir-728-P2 15: 2762818-2762877 [-] UCSC Ensembl
Mir-727-P2-v1 15: 2764145-2764210 [-] UCSC Ensembl
Mir-727-P2-v2 15: 2764146-2764208 [-] UCSC Ensembl
Variant

Tni-Mir-727-P2-v2

Seed UUGAGGC
Precursor
(pre-Mir +30nt flank)
GCAACACCCACUGUCCUGUAUGUCUUUUUCAGUCUUCAAUUCCUCCCAGCCCGUUACUAUGGAAACUGUGAGUUGAGGCGAGUUGAAGACUAAAAAUGCUGUACAGAUUCACGUAGCAGCUGG
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Structure
        10          20         30        40         50        60 
GCAACACCCACUGUCCU--    -| C     C            CU  -    CCGUUACUAU 
                   GUAU GU UUUUU AGUCUUCAAUUC  CC CAGC          \
                   CAUG CG AAAAA UCAGAAGUUGAG  GG GUUG          G
GGUCGACGAUGCACUUAGA    U^ U     -            C-  A    AGUGUCAAAG 
 120       110       100         90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
- +
Sp Sp Sp To
Star sequence

Tni-Mir-727-P2-v2_5p* (predicted)

mirBase accessionNone
Sequence
0- AGUCUUCAAUUCCUCCCAGCCC -22
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Mature sequence

Tni-Mir-727-P2-v2_3p

mirBase accessionNone
Sequence
41- GUUGAGGCGAGUUGAAGACUAA -63
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Variant

Tni-Mir-727-P2-v1

Seed UGAGGCG
Precursor
(pre-Mir +30nt flank)
CAGCAACACCCACUGUCCUGUAUGUCUUUUUCAGUCUUCAAUUCCUCCCAGCCCGUUACUAUGGAAACUGUGAGUUGAGGCGAGUUGAAGACUAAAAAUGCUGUACAGAUUCACGUAGCAGCUGGU
Get precursor sequence
Structure
        10         20         30        40         50        60   
CAGCAACACCCACUGUC-      -| C     C            CU  -    CCGUUACUAU 
                  CUGUAU GU UUUUU AGUCUUCAAUUC  CC CAGC          \
                  GACAUG CG AAAAA UCAGAAGUUGAG  GG GUUG          G
UGGUCGACGAUGCACUUA      U^ U     -            C-  A    AGUGUCAAAG 
    120       110       100         90         80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
Sp Sp Sp To
Star sequence

Tni-Mir-727-P2-v1_5p* (predicted)

mirBase accessionNone
Sequence
0- UCAGUCUUCAAUUCCUCCCAGCC -23
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Mature sequence

Tni-Mir-727-P2-v1_3p

mirBase accessionNone
Sequence
44- UUGAGGCGAGUUGAAGACUAAA -66
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