MirGeneDB ID | Tni-Mir-727-P2-v2 |
Family name |
MIR-727 (all species) |
Seed |
UUGAGGC |
Species |
Pufferfish (Tetraodon nigroviridis) |
MiRBase ID |
|
Paralogues |
Tni-Mir-727-P1-v1
Tni-Mir-727-P1-v2
Tni-Mir-727-P2-v1
|
Orthologues |
Gmo-Mir-727-P2
Mal-Mir-727-P2-v1
Mal-Mir-727-P2-v2
Spt-Mir-727
|
Node of Origin (locus) |
Clupeocephala
|
Node of Origin (family) |
Osteichthyes
|
Genome context (Tetraodon_nigroviridis.TETRAODON8.dna.toplevel) |
15: 2764146-2764208 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GCAACACCCACUGUCCUGUAUGUCUUUUUCAGUCUUCAAUUCCUCCCAGCCCGUUACUAUGGAAACUGUGAGUUGAGGCGAGUUGAAGACUAAAAAUGCUGUACAGAUUCACGUAGCAGCUGG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GCAACACCCACUGUCCU-- -| C C CU - CCGUUACUAU
GUAU GU UUUUU AGUCUUCAAUUC CC CAGC \
CAUG CG AAAAA UCAGAAGUUGAG GG GUUG G
GGUCGACGAUGCACUUAGA U^ U - C- A AGUGUCAAAG
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14) |
Tissue expression
|
|
Star sequence |
Tni-Mir-727-P2-v2_5p* (predicted) |
mirBase accession | None |
Sequence |
0- AGUCUUCAAUUCCUCCCAGCCC -22
Get sequence
|
Mature sequence |
Tni-Mir-727-P2-v2_3p |
mirBase accession | None |
Sequence |
41- GUUGAGGCGAGUUGAAGACUAA -63
Get sequence
|