MirGeneDB 2.1

MirGeneDB ID

Gmo-Mir-727-P2

Family name MIR-727 (all species)
Seed CAGUCUU
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-727
Paralogues Gmo-Mir-727-P1 
Orthologues Mal-Mir-727-P2-v1  Mal-Mir-727-P2-v2  Spt-Mir-727  Tni-Mir-727-P2-v1  Tni-Mir-727-P2-v2 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Osteichthyes
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)
GeneScaffold_3398: 325708-325773 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-727-P2)
Mir-727-P2 GeneScaffold_3398: 325708-325773 [+] UCSC Ensembl
Mir-728-P2 GeneScaffold_3398: 327629-327691 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAGAGAGACCAAAUGUCCUGUAUGUCAUUUUCAGUCUUCAAUUCCUUCCAGCCCGUCGCUAUGGAAACUGUGAGUUGAGGCGAAUUGAAGACUAAAAAUGCUGUCCAGAUACAAGUAGCAGCUGGU
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Structure
        10         20        30        40         50        60   
GAGAGAGACCAAAUGUC-   U   U      C            -|   C   CCGUCGCUAU 
                  CUG AUG CAUUUU AGUCUUCAAUUC CUUC AGC          \
                  GAC UGU GUAAAA UCAGAAGUUAAG GGAG UUG          G
UGGUCGACGAUGAACAUA   C   C      A            C^   -   AGUGUCAAAG 
    120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Br Gi He In Li Sk Sp Wh
Mature sequence

Gmo-Mir-727-P2_5p

mirBase accessionMIMAT0044220
Sequence
0- UCAGUCUUCAAUUCCUUCCAGC -22
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Star sequence

Gmo-Mir-727-P2_3p*

mirBase accessionNone
Sequence
43- GUUGAGGCGAAUUGAAGACUAAA -66
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