Mir-727-P1

MirGeneDB ID

Gmo-Mir-727-P1

Family name

MIR-727 (all species)

Species

Cod (Gadus morhua)

MiRBase ID

gmo-mir-727b

Paralogues

Gmo-Mir-727-P2

Orthologues

Dre-Mir-727-P1-v1 Spt-Mir-727 Tni-Mir-727-P1-v1

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Osteichthyes

Genome context
(Gadus_morhua.gadMor1.dna.toplevel)

contig193719: 589-655 [-] UCSC Ensembl

Seed

CAGUCUU

Precursor
(pre-Mir +30nt flank)

CACACGCACACCCAGAUCUGUGUGACCCUUUCAGUCUUCAGUUCCUCCCAGCCCAUGAGCAUGGCAAAGGUGUGUUGAGGCGAGUUGAAGACUUUAAGUGCUGUGCGGAGUUGAACCUGAGCCACGU

Get precursor sequence

Structure

        10          20        30        40         50        60   
CACACGCACACCCAGAU--|  UG  ACC   UC        GU  CU  -    CCAUGAGCAU 
                   CUG  UG   CUU  AGUCUUCA  UC  CC CAGC          \
                   GGC  GU   GAA  UCAGAAGU  AG  GG GUUG          G
UGCACCGAGUCCAAGUUGA^  GU  CGU   UU        UG  C-  A    UGUGGAAACG 
     120       110       100        90         80        70