Mir-210-P2

MirGeneDB ID

Sto-Mir-210-P2

Family name

MIR-210 (all species)

Species

Cloudy Catshark (Scyliorhinus torazame)

MiRBase ID

Paralogues

Sto-Mir-210-P1

Orthologues

Aca-Mir-210 Agr-Mir-210 Ami-Mir-210 Bfl-Mir-210 Bla-Mir-210 Bta-Mir-210 Cfa-Mir-210 Cja-Mir-210 Cli-Mir-210 Cmi-Mir-210 Cpi-Mir-210 Cpo-Mir-210 Dgr-Mir-210 Dma-Mir-210 Dno-Mir-210 Dpu-Mir-210 Dre-Mir-210 Eba-Mir-210 Ebu-Mir-210 Eca-Mir-210 Egr-Mir-210 Ete-Mir-210 Gga-Mir-210 Gja-Mir-210 Gmo-Mir-210 Hsa-Mir-210 Isc-Mir-210 Lan-Mir-210 Lch-Mir-210 Lgi-Mir-210 Lhy-Mir-210 Llo-Mir-210 Loc-Mir-210 Mal-Mir-210 Mdo-Mir-210 Mgi-Mir-210 Mml-Mir-210 Mmr-Mir-210 Mmu-Mir-210 Mom-Mir-210 Mun-Mir-210 Neu-Mir-210 Npo-Mir-210 Oan-Mir-210 Ocu-Mir-210 Ofu-Mir-210 Pab-Mir-210 Pau-Mir-210 Pbv-Mir-210 Pca-Mir-210 Pma-Mir-210 Rno-Mir-210 Sha-Mir-210 Sko-Mir-210 Sma-Mir-210 Snu-Mir-210 Spt-Mir-210 Tgu-Mir-210 Tni-Mir-210 War-Mir-210 Xtr-Mir-210

Node of Origin (locus)

S. torazame

Node of Origin (family)

Bilateria

Genome context
(GCA_003427355_STO_add)

BFAA01193566.1: 169-229 [-]

Seed

AGCCUCU

Precursor
(pre-Mir +30nt flank)

UGGAGCUGAGAGAUUGUCCAUGAUGCACGUUAGCCUCUGUCCAGCGCAUACUGUGUUUCUGACAUUCACUGUGCGUGUGACAGCGGCUGAUGAGAUUCUGGAGACUCCUCGCUGGAACAGC

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Structure

        10           20        30        40        50          
UGGAGCUGAGAGAUUGU---|  U  UGCA        U     CA       C  UGUUUC 
                    CCA GA    CGUUAGCC CUGUC  GCGCAUA UG      \
                    GGU CU    GUAGUCGG GACAG  UGCGUGU AC      U
CGACAAGGUCGCUCCUCAGA^  -  UAGA        C     UG       C  UUACAG 
 .       110       100         90        80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

To

Mature sequence

Sto-Mir-210-P2_5p

mirBase accession

None

Sequence

0- UAGCCUCUGUCCAGCGCAUACUG -23

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Co-mature sequence

Sto-Mir-210-P2_3p

mirBase accession

None

Sequence

38- CUGUGCGUGUGACAGCGGCUGAU -61

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