MirGeneDB 3.0
MirGeneDB ID

Sto-Mir-126-P2

Family name MIR-126 (all species)
Species Cloudy Catshark (Scyliorhinus torazame)
MiRBase ID
Paralogues Sto-Mir-126-P2-v1 
Orthologues Aca-Mir-126-P2-v1  Ami-Mir-126-P2-v1  Bta-Mir-126-P2-v1  Cfa-Mir-126-P2-v1  Cja-Mir-126-P2-v1  Cli-Mir-126-P2-v1  Cmi-Mir-126-P2-v1  Cpi-Mir-126-P2-v1  Cpo-Mir-126-P2-v1  Dno-Mir-126-P2-v1  Dre-Mir-126-P2a-v1  Dre-Mir-126-P2b-v1  Eca-Mir-126-P2-v1  Ete-Mir-126-P2-v1  Gga-Mir-126-P2-v1  Gja-Mir-126-P2-v1  Gmo-Mir-126-P2b-v1  Hsa-Mir-126-P2-v1  Laf-Mir-126-P2-v1  Lch-Mir-126-P2  Loc-Mir-126-P2-v1  Mal-Mir-126-P2b-v1  Mdo-Mir-126-P2-v1  Mml-Mir-126-P2-v1  Mmr-Mir-126-P2-v1  Mmu-Mir-126-P2-v1  Mun-Mir-126-P2-v1  Neu-Mir-126-P2-v1  Oan-Mir-126-P2-v1  Ocu-Mir-126-P2-v1  Pab-Mir-126-P2-v1  Pbv-Mir-126-P2-v1  Rno-Mir-126-P2-v1  Sha-Mir-126-P2-v1  Spt-Mir-126-P2  Tgu-Mir-126-P2-v1  Tni-Mir-126-P2b-v1  Xla-Mir-126-P2c  Xla-Mir-126-P2d  Xtr-Mir-126-P2-v1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Olfactores
Genome context
(GCA_003427355_STO_add)		 BFAA01020601.1: 4144-4202 [-]
Clustered miRNAs
(< 50kb from Mir-126-P2-v3)		 Mir-126-P2-v1 BFAA01020601.1: 4144-4202 [-]
Mir-126-P2-v2 BFAA01020601.1: 4144-4202 [-]
Mir-126-P2-v3 BFAA01020601.1: 4144-4202 [-]
Variant

Sto-Mir-126-P2-v3
Seed UCGUACC
Precursor
(pre-Mir +30nt flank)		 
AGGAUAAAGAAAUGGAUGUUGGUGACAGUCCAUUAUUACUUUUGGUACGCGCUGUGACACUUCAAACUCGUACCGUGAGUAAUAAUGCACAGUGGCUGACACUUUCGCCGCAGAUUCAU
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Structure
        10          20        30        40        50         
AGGAUAAAGAAAUGGAU--| UG  G  A  C           U       CGCUGUGAC 
                   GU  GU AC GU CAUUAUUACUU UGGUACG         \
                   CA  CG UG CA GUAAUAAUGAG GCCAUGC         A
UACUUAGACGCCGCUUUCA^ GU  G  A  C           U       UCAAACUUC 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
- +
To
Star sequence

Sto-Mir-126-P2-v3_5p*
mirBase accessionNone
Sequence 
0- CAUUAUUACUUUUGGUACGCGCU -23
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Mature sequence

Sto-Mir-126-P2-v3_3p
mirBase accessionNone
Sequence 
36- CUCGUACCGUGAGUAAUAAUGCA -59
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Variant

Sto-Mir-126-P2-v1
Seed CGUACCG
Precursor
(pre-Mir +30nt flank)		 
AGGAUAAAGAAAUGGAUGUUGGUGACAGUCCAUUAUUACUUUUGGUACGCGCUGUGACACUUCAAACUCGUACCGUGAGUAAUAAUGCACAGUGGCUGACACUUUCGCCGCAGAUUCAU
Get precursor sequence
Structure
        10          20        30        40        50         
AGGAUAAAGAAAUGGAU--| UG  G  A  C           U       CGCUGUGAC 
                   GU  GU AC GU CAUUAUUACUU UGGUACG         \
                   CA  CG UG CA GUAAUAAUGAG GCCAUGC         A
UACUUAGACGCCGCUUUCA^ GU  G  A  C           U       UCAAACUUC 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
- +
To
Star sequence

Sto-Mir-126-P2-v1_5p*
mirBase accessionNone
Sequence 
0- CAUUAUUACUUUUGGUACGCGC -22
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Mature sequence

Sto-Mir-126-P2-v1_3p
mirBase accessionNone
Sequence 
37- UCGUACCGUGAGUAAUAAUGCA -59
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Variant

Sto-Mir-126-P2-v2
Seed AUUAUUA
Precursor
(pre-Mir +30nt flank)		 
AGGAUAAAGAAAUGGAUGUUGGUGACAGUCCAUUAUUACUUUUGGUACGCGCUGUGACACUUCAAACUCGUACCGUGAGUAAUAAUGCACAGUGGCUGACACUUUCGCCGCAGAUUCAU
Get precursor sequence
Structure
        10          20        30        40        50         
AGGAUAAAGAAAUGGAU--| UG  G  A  C           U       CGCUGUGAC 
                   GU  GU AC GU CAUUAUUACUU UGGUACG         \
                   CA  CG UG CA GUAAUAAUGAG GCCAUGC         A
UACUUAGACGCCGCUUUCA^ GU  G  A  C           U       UCAAACUUC 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
To
Mature sequence

Sto-Mir-126-P2-v2_5p
mirBase accessionNone
Sequence 
0- CAUUAUUACUUUUGGUACGCG -21
Get sequence
Star sequence

Sto-Mir-126-P2-v2_3p*
mirBase accessionNone
Sequence 
38- CGUACCGUGAGUAAUAAUGCA -59
Get sequence