MirGeneDB 3.0
MirGeneDB ID

Rno-Mir-126-P2

Family name MIR-126 (all species)
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-126a
Paralogues
Orthologues Aca-Mir-126-P2-v1  Ami-Mir-126-P2-v1  Bta-Mir-126-P2-v1  Cfa-Mir-126-P2-v1  Cja-Mir-126-P2-v1  Cli-Mir-126-P2-v1  Cmi-Mir-126-P2-v1  Cpi-Mir-126-P2-v1  Cpo-Mir-126-P2-v1  Dno-Mir-126-P2-v1  Dre-Mir-126-P2a-v1  Dre-Mir-126-P2b-v1  Eca-Mir-126-P2-v1  Ete-Mir-126-P2-v1  Gga-Mir-126-P2-v1  Gja-Mir-126-P2-v1  Gmo-Mir-126-P2b-v1  Hsa-Mir-126-P2-v1  Laf-Mir-126-P2-v1  Lch-Mir-126-P2  Loc-Mir-126-P2-v1  Mal-Mir-126-P2b-v1  Mdo-Mir-126-P2-v1  Mml-Mir-126-P2-v1  Mmr-Mir-126-P2-v1  Mmu-Mir-126-P2-v1  Mun-Mir-126-P2-v1  Neu-Mir-126-P2-v1  Oan-Mir-126-P2-v1  Ocu-Mir-126-P2-v1  Pab-Mir-126-P2-v1  Pbv-Mir-126-P2-v1  Sha-Mir-126-P2-v1  Spt-Mir-126-P2  Sto-Mir-126-P2-v1  Tgu-Mir-126-P2-v1  Tni-Mir-126-P2b-v1  Xla-Mir-126-P2c  Xla-Mir-126-P2d  Xtr-Mir-126-P2-v1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Olfactores
Genome context
(rn6)		 chr3: 4042496-4042554 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-126-P2-v1)		 Mir-126-P2-v1 chr3: 4042496-4042554 [+] UCSC Ensembl
Mir-126-P2-v2 chr3: 4042496-4042554 [+] UCSC Ensembl
Mir-126-P2-v3 chr3: 4042496-4042554 [+] UCSC Ensembl
Variant

Rno-Mir-126-P2-v1
Seed CGUACCG
Precursor
(pre-Mir +30nt flank)		 
CCUGGAGCCGUGUCUUUGCCGGUGACAGCACAUUAUUACUUUUGGUACGCGCUGUGACACUUCAAACUCGUACCGUGAGUAAUAAUGCGUGGUCAACAGCGCAGCACCGGGAGUGCAUC
Get precursor sequence
Structure
        10          20        30        40        50         
CCUGGAGCCGUGUCUUU--| CGG    A  A           U       CGCUGUGAC 
                   GC   UGAC GC CAUUAUUACUU UGGUACG         \
                   CG   ACUG UG GUAAUAAUGAG GCCAUGC         A
CUACGUGAGGGCCACGACG^ ACA    G  C           U       UCAAACUUC 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Dr Dr Ad Bi Bi Bi Bi Br Br Br Br Ce Ce Ce Ce Co Co Co Co Du Du Du Du Fa He He He Hi Hi Il Il Je Je Ki Ki Ki Ki Ki La Li Li Li Li Li Li Lu Me Me Mu Ov Pa Pa Pa Sk Sm So So So So Sp St St St St Te Te Th Ut Wh
Star sequence

Rno-Mir-126-P2-v1_5p*
mirBase accessionMIMAT0000831
Sequence 
0- CAUUAUUACUUUUGGUACGCGC -22
Get sequence
Proposed targets microrna.org: MIMAT0000831
TargetScanVert: rno-miR-126a-5p
miRDB: MIMAT0000831
Mature sequence

Rno-Mir-126-P2-v1_3p
mirBase accessionMIMAT0000832
Sequence 
37- UCGUACCGUGAGUAAUAAUGCG -59
Get sequence
Proposed targets microrna.org: MIMAT0000832
TargetScanVert: rno-miR-126a-3p
miRDB: MIMAT0000832
Variant

Rno-Mir-126-P2-v2
Seed AUUAUUA
Precursor
(pre-Mir +30nt flank)		 
CCUGGAGCCGUGUCUUUGCCGGUGACAGCACAUUAUUACUUUUGGUACGCGCUGUGACACUUCAAACUCGUACCGUGAGUAAUAAUGCGUGGUCAACAGCGCAGCACCGGGAGUGCAUC
Get precursor sequence
Structure
        10          20        30        40        50         
CCUGGAGCCGUGUCUUU--| CGG    A  A           U       CGCUGUGAC 
                   GC   UGAC GC CAUUAUUACUU UGGUACG         \
                   CG   ACUG UG GUAAUAAUGAG GCCAUGC         A
CUACGUGAGGGCCACGACG^ ACA    G  C           U       UCAAACUUC 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
Dr Dr Ad Bi Bi Bi Bi Br Br Br Br Ce Ce Ce Ce Co Co Co Co Du Du Du Du Fa He He He Hi Hi Il Il Je Je Ki Ki Ki Ki Ki La Li Li Li Li Li Li Lu Me Me Mu Ov Pa Pa Pa Sk Sm So So So So Sp St St St St Te Te Th Ut Wh
Mature sequence

Rno-Mir-126-P2-v2_5p
mirBase accessionMIMAT0000831
Sequence 
0- CAUUAUUACUUUUGGUACGCG -21
Get sequence
Proposed targets microrna.org: MIMAT0000831
TargetScanVert: rno-miR-126a-5p
miRDB: MIMAT0000831
Star sequence

Rno-Mir-126-P2-v2_3p*
mirBase accessionMIMAT0000832
Sequence 
38- CGUACCGUGAGUAAUAAUGCG -59
Get sequence
Proposed targets microrna.org: MIMAT0000832
TargetScanVert: rno-miR-126a-3p
miRDB: MIMAT0000832
Variant

Rno-Mir-126-P2-v3
Seed UCGUACC
Precursor
(pre-Mir +30nt flank)		 
CCUGGAGCCGUGUCUUUGCCGGUGACAGCACAUUAUUACUUUUGGUACGCGCUGUGACACUUCAAACUCGUACCGUGAGUAAUAAUGCGUGGUCAACAGCGCAGCACCGGGAGUGCAUC
Get precursor sequence
Structure
        10          20        30        40        50         
CCUGGAGCCGUGUCUUU--| CGG    A  A           U       CGCUGUGAC 
                   GC   UGAC GC CAUUAUUACUU UGGUACG         \
                   CG   ACUG UG GUAAUAAUGAG GCCAUGC         A
CUACGUGAGGGCCACGACG^ ACA    G  C           U       UCAAACUUC 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Dr Dr Ad Bi Bi Bi Bi Br Br Br Br Ce Ce Ce Ce Co Co Co Co Du Du Du Du Fa He He He Hi Hi Il Il Je Je Ki Ki Ki Ki Ki La Li Li Li Li Li Li Lu Me Me Mu Ov Pa Pa Pa Sk Sm So So So So Sp St St St St Te Te Th Ut Wh
Star sequence

Rno-Mir-126-P2-v3_5p*
mirBase accessionMIMAT0000831
Sequence 
0- CAUUAUUACUUUUGGUACGCGCU -23
Get sequence
Proposed targets microrna.org: MIMAT0000831
TargetScanVert: rno-miR-126a-5p
miRDB: MIMAT0000831
Mature sequence

Rno-Mir-126-P2-v3_3p
mirBase accessionMIMAT0000832
Sequence 
36- CUCGUACCGUGAGUAAUAAUGCG -59
Get sequence
Proposed targets microrna.org: MIMAT0000832
TargetScanVert: rno-miR-126a-3p
miRDB: MIMAT0000832