MirGeneDB 3.0
MirGeneDB ID

Gja-Mir-126-P2

Family name MIR-126 (all species)
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues
Orthologues Aca-Mir-126-P2-v1  Ami-Mir-126-P2-v1  Bta-Mir-126-P2-v1  Cfa-Mir-126-P2-v1  Cja-Mir-126-P2-v1  Cli-Mir-126-P2-v1  Cmi-Mir-126-P2-v1  Cpi-Mir-126-P2-v1  Cpo-Mir-126-P2-v1  Dno-Mir-126-P2-v1  Dre-Mir-126-P2a-v1  Dre-Mir-126-P2b-v1  Eca-Mir-126-P2-v1  Ete-Mir-126-P2-v1  Gga-Mir-126-P2-v1  Gmo-Mir-126-P2b-v1  Hsa-Mir-126-P2-v1  Laf-Mir-126-P2-v1  Lch-Mir-126-P2  Loc-Mir-126-P2-v1  Mal-Mir-126-P2b-v1  Mdo-Mir-126-P2-v1  Mml-Mir-126-P2-v1  Mmr-Mir-126-P2-v1  Mmu-Mir-126-P2-v1  Mun-Mir-126-P2-v1  Neu-Mir-126-P2-v1  Oan-Mir-126-P2-v1  Ocu-Mir-126-P2-v1  Pab-Mir-126-P2-v1  Pbv-Mir-126-P2-v1  Rno-Mir-126-P2-v1  Sha-Mir-126-P2-v1  Spt-Mir-126-P2  Sto-Mir-126-P2-v1  Tgu-Mir-126-P2-v1  Tni-Mir-126-P2b-v1  Xla-Mir-126-P2c  Xla-Mir-126-P2d  Xtr-Mir-126-P2-v1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Olfactores
Genome context
(GCF_001447785.1_Gekko_japonicus)		 NW_015168044.1: 87527-87585 [-]
Clustered miRNAs
(< 50kb from Mir-126-P2-v1)		 Mir-126-P2-v1 NW_015168044.1: 87527-87585 [-]
Mir-126-P2-v2 NW_015168044.1: 87527-87585 [-]
Mir-126-P2-v3 NW_015168044.1: 87527-87585 [-]
Variant

Gja-Mir-126-P2-v1
Seed CGUACCG
Precursor
(pre-Mir +30nt flank)		 
GAGGAGCGCCAGGCUAUGCCGACCACGGCCCAUUAUUACUUUUGGUACGCGCUGUGCCACUUCAAACUCGUACCGUGAGUAAUAAUGCGCGGAGGGCUGGCACCCACGGCUGGCGGGAG
Get precursor sequence
Structure
        10         20         30        40        50         
GAGGAGCGCCAGGCUAU-    A  ACG-| C           U       CGCUGUGCC 
                  GCCG CC    GC CAUUAUUACUU UGGUACG         \
                  CGGU GG    CG GUAAUAAUGAG GCCAUGC         A
GAGGGCGGUCGGCACCCA    C  GAGG^ C           U       UCAAACUUC 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
- +
To
Star sequence

Gja-Mir-126-P2-v1_5p*
mirBase accessionNone
Sequence 
0- CAUUAUUACUUUUGGUACGCGC -22
Get sequence
Mature sequence

Gja-Mir-126-P2-v1_3p
mirBase accessionNone
Sequence 
37- UCGUACCGUGAGUAAUAAUGCG -59
Get sequence
Variant

Gja-Mir-126-P2-v2
Seed AUUAUUA
Precursor
(pre-Mir +30nt flank)		 
GAGGAGCGCCAGGCUAUGCCGACCACGGCCCAUUAUUACUUUUGGUACGCGCUGUGCCACUUCAAACUCGUACCGUGAGUAAUAAUGCGCGGAGGGCUGGCACCCACGGCUGGCGGGAG
Get precursor sequence
Structure
        10         20         30        40        50         
GAGGAGCGCCAGGCUAU-    A  ACG-| C           U       CGCUGUGCC 
                  GCCG CC    GC CAUUAUUACUU UGGUACG         \
                  CGGU GG    CG GUAAUAAUGAG GCCAUGC         A
GAGGGCGGUCGGCACCCA    C  GAGG^ C           U       UCAAACUUC 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
To
Mature sequence

Gja-Mir-126-P2-v2_5p
mirBase accessionNone
Sequence 
0- CAUUAUUACUUUUGGUACGCG -21
Get sequence
Star sequence

Gja-Mir-126-P2-v2_3p*
mirBase accessionNone
Sequence 
38- CGUACCGUGAGUAAUAAUGCG -59
Get sequence
Variant

Gja-Mir-126-P2-v3
Seed UCGUACC
Precursor
(pre-Mir +30nt flank)		 
GAGGAGCGCCAGGCUAUGCCGACCACGGCCCAUUAUUACUUUUGGUACGCGCUGUGCCACUUCAAACUCGUACCGUGAGUAAUAAUGCGCGGAGGGCUGGCACCCACGGCUGGCGGGAG
Get precursor sequence
Structure
        10         20         30        40        50         
GAGGAGCGCCAGGCUAU-    A  ACG-| C           U       CGCUGUGCC 
                  GCCG CC    GC CAUUAUUACUU UGGUACG         \
                  CGGU GG    CG GUAAUAAUGAG GCCAUGC         A
GAGGGCGGUCGGCACCCA    C  GAGG^ C           U       UCAAACUUC 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
- +
To
Star sequence

Gja-Mir-126-P2-v3_5p*
mirBase accessionNone
Sequence 
0- CAUUAUUACUUUUGGUACGCGCU -23
Get sequence
Mature sequence

Gja-Mir-126-P2-v3_3p
mirBase accessionNone
Sequence 
36- CUCGUACCGUGAGUAAUAAUGCG -59
Get sequence