| MirGeneDB ID | Xla-Mir-126-P2c |
|---|
| Family name |
MIR-126 (all species) |
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| Species |
African clawed frog (Xenopus laevis) |
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| MiRBase ID |
xla-mir-126-1
|
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| Paralogues |
Xla-Mir-126-P2d
|
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| Orthologues |
Aca-Mir-126-P2-v1
Ami-Mir-126-P2-v1
Bta-Mir-126-P2-v1
Cfa-Mir-126-P2-v1
Cja-Mir-126-P2-v1
Cli-Mir-126-P2-v1
Cmi-Mir-126-P2-v1
Cpi-Mir-126-P2-v1
Cpo-Mir-126-P2-v1
Dno-Mir-126-P2-v1
Eca-Mir-126-P2-v1
Ete-Mir-126-P2-v1
Gga-Mir-126-P2-v1
Gja-Mir-126-P2-v1
Hsa-Mir-126-P2-v1
Laf-Mir-126-P2-v1
Lch-Mir-126-P2
Loc-Mir-126-P2-v1
Mdo-Mir-126-P2-v1
Mml-Mir-126-P2-v1
Mmr-Mir-126-P2-v1
Mmu-Mir-126-P2-v1
Mun-Mir-126-P2-v1
Neu-Mir-126-P2-v1
Oan-Mir-126-P2-v1
Ocu-Mir-126-P2-v1
Pab-Mir-126-P2-v1
Pbv-Mir-126-P2-v1
Rno-Mir-126-P2-v1
Sha-Mir-126-P2-v1
Spt-Mir-126-P2
Sto-Mir-126-P2-v1
Tgu-Mir-126-P2-v1
Xtr-Mir-126-P2-v1
|
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| Node of Origin (locus) |
X. laevis
|
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| Node of Origin (family) |
Olfactores
|
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Genome context
(GCF_001663975.1_XLA_v2) |
NC_030738.1: 4396802-4396860 [+]
UCSC
Ensembl
|
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| Seed |
AUUAUUA |
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Precursor
(pre-Mir +30nt flank) |
AGACGGCCAUGCUGAAGGUUGGUGGCUGUGCAUUAUUACUUUUGGUACGCGCUGUGUCACAUCAAACUCGUACCGUGAGUAAUAAUGCGCGGCUGCCAAUAAUUCCGACGAGGAUGGGU
Get precursor sequence
|
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| Structure | 10 20 30 40 50
AGACGGCCAUGCUGAAG--| UG U CGCUGUGUC
GUUGG GCUGUGCAUUAUUACUU UGGUACG \
UAACC CGGCGCGUAAUAAUGAG GCCAUGC A
UGGGUAGGAGCAGCCUUAA^ GU U UCAAACUAC
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Xla-Mir-126-P2c_5p |
| mirBase accession | MIMAT0046435 |
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| Sequence |
0- CAUUAUUACUUUUGGUACGCG -21
Get sequence
|
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| Star sequence |
Xla-Mir-126-P2c_3p* |
| mirBase accession | MIMAT0046436 |
|---|
| Sequence |
38- CGUACCGUGAGUAAUAAUGCG -59
Get sequence
|
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