MirGeneDB 3.0
MirGeneDB ID

Sro-Mir-92-P17

Family name MIR-92 (all species)
Species Roscoff worm (Symsagittifera roscoffensis)
MiRBase ID
Paralogues Sro-Mir-92-P16  Sro-Mir-92-P18  Sro-Mir-92-P19  Sro-Mir-92-P20 
Orthologues Asu-Mir-92  Cel-Mir-92  Esc-Mir-92  Gsp-Mir-92  Hmi-Mir-92  Isc-Mir-92  Obi-Mir-92  Sme-Mir-92  Spu-Mir-92-o17 
Node of Origin (locus) S. roscoffensis
Node of Origin (family) Bilateria
Genome context
(GCA_025153585.1_SymRos_1_5_genomic)		 JANVAR010000529.1: 864175-864247 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-92-P17)		 Mir-92-P17 JANVAR010000529.1: 864175-864247 [-] UCSC Ensembl
Mir-92-P16 JANVAR010000529.1: 864397-864461 [-] UCSC Ensembl
Seed AUUGCAC
Precursor
(pre-Mir +30nt flank)		 
UGGAGCUCAUAUCUAGGACUUUGAGCUUAUCAGGCCUGUUUUGUGUAUGUAUUCUACAAUUGAAACUUAAACUUUGUGAAUAUUGCACUUGGCUCGGCCUCAUAGCUCAUUGUCACGUAUAGUGUAUCUUAGA
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Structure
        10           20        30         40        50        60      
UGGAGCUCAUAUCUAGG---| UU      U  C     U-   UU     U     CUACAAUUGAAA 
                    AC  UGAGCU AU AGGCC  GUU  GUGUA GUAUU            \
                    UG  ACUCGA UA UCCGG  CGG  CACGU UAUAA            C
AGAUUCUAUGUGAUAUGCAC^ UU      -  C     CU   UU     -     GUGUUUCAAAUU 
 130       120       110        100        90         80        70
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending new data.
3' NTU No
MotifsNo
Tissue expression
- +
Po
Star sequence

Sro-Mir-92-P17_5p*
mirBase accessionNone
Sequence 
0- CAGGCCUGUUUUGUGUAUGUAUU -23
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Mature sequence

Sro-Mir-92-P17_3p
mirBase accessionNone
Sequence 
50- UAUUGCACUUGGCUCGGCCUCAU -73
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