Mir-210-P18

MirGeneDB ID

Sme-Mir-210-P18

Family name

MIR-210 (all species)

Species

Freshwater planarian (Schmidtea mediterranea)

MiRBase ID

sme-mir-2164

Paralogues

Sme-Mir-210-P17

Orthologues

Aca-Mir-210 Agr-Mir-210 Ami-Mir-210 Bfl-Mir-210 Bla-Mir-210 Bta-Mir-210 Cfa-Mir-210 Cja-Mir-210 Cli-Mir-210 Cmi-Mir-210 Cpi-Mir-210 Cpo-Mir-210 Dgr-Mir-210 Dma-Mir-210 Dno-Mir-210 Dpu-Mir-210 Dre-Mir-210 Eba-Mir-210 Ebu-Mir-210 Eca-Mir-210 Egr-Mir-210 Ete-Mir-210 Gga-Mir-210 Gja-Mir-210 Gmo-Mir-210 Hsa-Mir-210 Isc-Mir-210 Lan-Mir-210 Lch-Mir-210 Lgi-Mir-210 Lhy-Mir-210 Llo-Mir-210 Loc-Mir-210 Mal-Mir-210 Mdo-Mir-210 Mgi-Mir-210 Mml-Mir-210 Mmr-Mir-210 Mmu-Mir-210 Mom-Mir-210 Mun-Mir-210 Neu-Mir-210 Npo-Mir-210 Oan-Mir-210 Ocu-Mir-210 Ofu-Mir-210 Pab-Mir-210 Pau-Mir-210 Pbv-Mir-210 Pca-Mir-210 Pma-Mir-210 Rno-Mir-210 Sha-Mir-210 Sko-Mir-210 Sma-Mir-210 Snu-Mir-210 Spt-Mir-210 Tgu-Mir-210 Tni-Mir-210 War-Mir-210 Xtr-Mir-210

Node of Origin (locus)

S. mediterranea

Node of Origin (family)

Bilateria

Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)

NNSW01000022_dd_Smes_g4_22: 2834662-2834717 [-] UCSC Ensembl

Seed

UGUGCGU

Precursor
(pre-Mir +30nt flank)

AUUUUAUUAACCAUAUUCAGGUAAUAAAAUUAUAUUUGAUUCACGUAGAGAUUGAGAUCUAUCUUGUGCGUGAUAUCAAGUAUAAUAAUGUUCUGACUCUUCAUCUAAUAUAUAAA

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Structure

        10            20        30        40          50      
AUUUUAUUAACCAUAUU----|   UA   AA            -       -    UUGA 
                     CAGG  AUA  AUUAUAUUUGAU UCACGUA GAGA    G
                     GUCU  UGU  UAAUAUGAACUA AGUGCGU UUCU    A
AAAUAUAUAAUCUACUUCUCA^   --   AA            U       G    AUCU 
    110       100          90        80        70        60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ag	Ag	Di	Gf	Ne	Ph	Se	Se	Se	Se	Se	Se	Se	Se	Se	Se	Se	Wh	Wh	Wh

Star sequence

Sme-Mir-210-P18_5p*

mirBase accession

MIMAT0012156

Sequence

0- UAUAUUUGAUUCACGUAGAGA -21

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Mature sequence

Sme-Mir-210-P18_3p

mirBase accession

MIMAT0011259

Sequence

33- UUGUGCGUGAUAUCAAGUAUAAU -56

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