MirGeneDB 3.0
MirGeneDB ID

Pmi-Mir-92-o27

Family name MIR-92 (all species)
Species Bat starfish (Patiria miniata)
MiRBase ID
Paralogues Pmi-Mir-92-o21  Pmi-Mir-92-o22  Pmi-Mir-92-o23  Pmi-Mir-92-o24  Pmi-Mir-92-o25  Pmi-Mir-92-o26 
Orthologues Asu-Mir-92  Cel-Mir-92  Esc-Mir-92  Gsp-Mir-92  Hmi-Mir-92  Isc-Mir-92  Obi-Mir-92  Sme-Mir-92 
Node of Origin (locus) P. miniata
Node of Origin (family) Bilateria
Genome context
(Pmin1)		 JH769491.1: 33956-34019 [+]
Clustered miRNAs
(< 50kb from Mir-92-o27)		 Mir-92-o26 JH769491.1: 32701-32762 [+]
Mir-92-o27 JH769491.1: 33956-34019 [+]
Seed AUUGCAC
Precursor
(pre-Mir +30nt flank)		 
UUACUUAGUACCUCUUUGUCUGCCUUGCGCAGGCCUGGGCCUGUGCAAUGCUUUGGAUUCACUGUGGUCUAGUAUUGCACUCCCCCCGGCCUUUGGAAGGCAGAUACAUGCAACGUGCUUCAUA
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Structure
        10          20        30        40        50        60 
UUACUUAGUACCUCUUU--|        G  C     U   CCU          UUGGAUUC 
                   GUCUGCCUU CG AGGCC GGG   GUGCAAUGCU        A
                   UAGACGGAA GU UCCGG CCC   CACGUUAUGA        C
AUACUUCGUGCAACGUACA^        G  U     C   CCU          UCUGGUGU 
  120       110       100        90        80        70
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending new data.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
Em To
Star sequence

Pmi-Mir-92-o27_5p*
mirBase accessionNone
Sequence 
0- AGGCCUGGGCCUGUGCAAUGCU -22
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Mature sequence

Pmi-Mir-92-o27_3p
mirBase accessionNone
Sequence 
42- UAUUGCACUCCCCCCGGCCUUU -64
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