MirGeneDB 2.1

MirGeneDB ID

Pmi-Mir-92-o23

Family name MIR-92 (all species)
Seed AUUGCAC
Species Bat starfish (Patiria miniata)
MiRBase ID pmi-mir-92a
Paralogues Pmi-Mir-92-o21  Pmi-Mir-92-o22  Pmi-Mir-92-o24  Pmi-Mir-92-o25  Pmi-Mir-92-o26  Pmi-Mir-92-o27 
Orthologues Asu-Mir-92  Cel-Mir-92  Esc-Mir-92  Isc-Mir-92  Obi-Mir-92  Sme-Mir-92 
Node of Origin (locus) P. miniata
Node of Origin (family) Bilateria
Genome context
(Pmin1)
JH772232.1: 11838-11900 [-]
Clustered miRNAs
(< 50kb from Mir-92-o23)
Mir-92-o25 JH772232.1: 9421-9483 [-]
Mir-92-o24 JH772232.1: 11031-11096 [-]
Mir-92-o23 JH772232.1: 11838-11900 [-]
Mir-92-o22 JH772232.1: 12795-12854 [-]
Precursor
(pre-Mir +30nt flank)
AUCUUCCACUACAUUAAGGGCGUGUCAGACAGGCCGAAAUUAGUGUCAUAUGUUAACAAAGAAGAAUGUCGUAUUGCACUUGUCUCGGCCUGCCUGCCACGUGCUCUAGUCUCGACGGUCUCA
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Structure
        10          20        30        40        50        60 
AUCUUCCACUACAUUAA--|G     U   A        A  U     C     UUAACAAA 
                   G GCGUG CAG CAGGCCGA AU AGUGU AUAUG        \
                   C UGCAC GUC GUCCGGCU UG UCACG UAUGC        G
ACUCUGGCAGCUCUGAUCU^G     C   C        C  U     U     UGUAAGAA 
 120       110       100        90        80        70
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending new data.
3' NTU No
MotifsNo
Tissue expression
 +
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Star sequence

Pmi-Mir-92-o23_5p*

mirBase accessionNone
Sequence
0- AGGCCGAAAUUAGUGUCAUAUG -22
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Mature sequence

Pmi-Mir-92-o23_3p

mirBase accessionMIMAT0032151
Sequence
41- UAUUGCACUUGUCUCGGCCUGC -63
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