MirGeneDB 2.1

MirGeneDB ID

Pmi-Mir-92-o25

Family name MIR-92 (all species)
Seed AUUGCAC
Species Bat starfish (Patiria miniata)
MiRBase ID pmi-mir-92c
Paralogues Pmi-Mir-92-o21  Pmi-Mir-92-o22  Pmi-Mir-92-o23  Pmi-Mir-92-o24  Pmi-Mir-92-o26  Pmi-Mir-92-o27 
Orthologues Asu-Mir-92  Cel-Mir-92  Esc-Mir-92  Isc-Mir-92  Obi-Mir-92  Sme-Mir-92 
Node of Origin (locus) P. miniata
Node of Origin (family) Bilateria
Genome context
(Pmin1)
JH772232.1: 9421-9483 [-]
Clustered miRNAs
(< 50kb from Mir-92-o25)
Mir-92-o25 JH772232.1: 9421-9483 [-]
Mir-92-o24 JH772232.1: 11031-11096 [-]
Mir-92-o23 JH772232.1: 11838-11900 [-]
Mir-92-o22 JH772232.1: 12795-12854 [-]
Precursor
(pre-Mir +30nt flank)
GAUGACGUCAGAAAUCUCAGGUGAUGGCGCACCGGCGGGGACAUUUUCAAUCCUGUCCAAGACUUUUCAAGUAUUGCACUUGUCCCGGCCAGCGCGACACUAAGCACUUACAUCAAGUCUACG
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Structure
        10           20        30        40        50        60  
GAUGACGUCAGAAAUCUCA---|   AUG    ACC   G      UUUU    C  GUCCAAG 
                      GGUG   GCGC   GGC GGGACA    CAAU CU       \
                      UCAC   CGCG   CCG CCCUGU    GUUA GA       A
GCAUCUGAACUACAUUCACGAA^   AG-    A--   G      UCAC    U  ACUUUUC 
 120       110       100           90        80        70
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending new data.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
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Star sequence

Pmi-Mir-92-o25_5p* (predicted)

mirBase accessionNone
Sequence
0- ACCGGCGGGGACAUUUUCAAUCCU -24
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Mature sequence

Pmi-Mir-92-o25_3p

mirBase accessionMIMAT0032153
Sequence
41- UAUUGCACUUGUCCCGGCCAGC -63
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