MirGeneDB 3.0
MirGeneDB ID

Pfl-Mir-92-o45

Family name MIR-92 (all species)
Species Ptychodera (Ptychodera flava)
MiRBase ID
Paralogues Pfl-Mir-92-o41  Pfl-Mir-92-o42  Pfl-Mir-92-o43  Pfl-Mir-92-o44 
Orthologues Asu-Mir-92  Cel-Mir-92  Esc-Mir-92  Gsp-Mir-92  Hmi-Mir-92  Isc-Mir-92  Obi-Mir-92  Sme-Mir-92 
Node of Origin (locus) P. flava
Node of Origin (family) Bilateria
Genome context
(Pfl)		 LD343282.1: 115958-116021 [+]
Clustered miRNAs
(< 50kb from Mir-92-o45)		 Mir-92-o41 LD343282.1: 96920-96979 [+]
Mir-92-o42 LD343282.1: 114848-114906 [+]
Mir-92-o43 LD343282.1: 115115-115177 [+]
Mir-92-o44 LD343282.1: 115395-115459 [+]
Mir-92-o45 LD343282.1: 115958-116021 [+]
Seed AUUGCAC
Precursor
(pre-Mir +30nt flank)		 
CCUAAAGUAUGUUAUCUGGUCGGACUGUAUAGGUUGGGACUUUUGCAAUUUCCUUCGAUAAUAUGACAGAGAUAUUGCACUCGUCCCGGCCUGUAUGUCGCGACUAUGCUCAUCCAUUGCGUGC
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Structure
        10          20         30        40        50        60 
CCUAAAGUAUGUUAUCU--     -|  U              UUU      U  CUUCGAUA 
                   GGUCG GAC GUAUAGGUUGGGAC   UGCAAU UC        A
                   UCAGC CUG UAUGUCCGGCCCUG   ACGUUA AG        U
CGUGCGUUACCUACUCGUA     G^  -              CUC      U  AGACAGUA 
  120       110       100         90        80        70
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending new data.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
To
Star sequence

Pfl-Mir-92-o45_5p*
mirBase accessionNone
Sequence 
0- AGGUUGGGACUUUUGCAAUUUC -22
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Mature sequence

Pfl-Mir-92-o45_3p
mirBase accessionNone
Sequence 
42- UAUUGCACUCGUCCCGGCCUGU -64
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