MirGeneDB 3.0
MirGeneDB ID

Pfl-Mir-92-o43

Family name MIR-92 (all species)
Species Ptychodera (Ptychodera flava)
MiRBase ID
Paralogues Pfl-Mir-92-o41  Pfl-Mir-92-o42  Pfl-Mir-92-o44  Pfl-Mir-92-o45 
Orthologues Asu-Mir-92  Cel-Mir-92  Esc-Mir-92  Gsp-Mir-92  Hmi-Mir-92  Isc-Mir-92  Obi-Mir-92  Sme-Mir-92 
Node of Origin (locus) P. flava
Node of Origin (family) Bilateria
Genome context
(Pfl)		 LD343282.1: 115115-115177 [+]
Clustered miRNAs
(< 50kb from Mir-92-o43)		 Mir-92-o41 LD343282.1: 96920-96979 [+]
Mir-92-o42 LD343282.1: 114848-114906 [+]
Mir-92-o43 LD343282.1: 115115-115177 [+]
Mir-92-o44 LD343282.1: 115395-115459 [+]
Mir-92-o45 LD343282.1: 115958-116021 [+]
Seed AUUGCAC
Precursor
(pre-Mir +30nt flank)		 
AGAUUUGAGAUUUCUUCAACUGUAACGUGCAGGUUGGGAUUUGCUGCAAGUAUGAGAAAGUUUUGGCGCCAUAUUGCACUUGUCCCGGCCUGCAUGUCGCACGUGUCUAGGCAGCCAUCUUGG
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Structure
        10         20         30        40        50        60  
AGAUUUGAGAUUUCUUCA-  -| UA                UUGC     G    AGAAAGU 
                   AC UG  ACGUGCAGGUUGGGAU    UGCAA UAUG       \
                   UG AC  UGUACGUCCGGCCCUG    ACGUU AUAC       U
GGUUCUACCGACGGAUCUG  C^ GC                UUC-     -    CGCGGUU 
 120       110       100        90        80          70
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending new data.
3' NTU No
MotifsNo
Tissue expression
- +
To
Star sequence

Pfl-Mir-92-o43_5p* (predicted)
mirBase accessionNone
Sequence 
0- AGGUUGGGAUUUGCUGCAAGUAUG -24
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Mature sequence

Pfl-Mir-92-o43_3p
mirBase accessionNone
Sequence 
41- UAUUGCACUUGUCCCGGCCUGC -63
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